; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007849 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007849
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:6374874..6375851
RNA-Seq ExpressionLag0007849
SyntenyLag0007849
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]1.3e-1834.64Show/hide
Query:  WRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLL
        W+ PP S  K+N+DA+V       G G ++  + GEV  A+  ++     ++  E   V+ G+QL   +G A  ++E+DS  +V +++ ++H   EVG L
Subjt:  WRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLL

Query:  IDEVRGILHPWDNG-KVLFTPRQGNKAAHVLASLAF-SYVERVWLEEWPSEIS
        I +V+ +L   ++  +V F PR  N+ AH L+ LA  + +E+VWLEE P+EI+
Subjt:  IDEVRGILHPWDNG-KVLFTPRQGNKAAHVLASLAF-SYVERVWLEEWPSEIS

PON87267.1 Ribonuclease H-like domain containing protein [Trema orientale]1.0e-1833.85Show/hide
Query:  YLNAFHVGGGRRLAEDYLRGQMSD------HEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQ
        Y+     GGG  L E     Q+ D      ++K   W PP +  LKLN+DA+V    G +G G V+R   G+V  A    ++  +   +AE + + +G+ 
Subjt:  YLNAFHVGGGRRLAEDYLRGQMSD------HEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQ

Query:  LARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERV-WLEEWPSEISDVLS
         A++      +VETDSLR+V  L G     +E  L++D+V+ +L   D+G  +F  R GN+A+H LA  A S    + WLEE P  IS +++
Subjt:  LARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERV-WLEEWPSEISDVLS

XP_021716820.1 uncharacterized protein LOC110684687 [Chenopodium quinoa]1.0e-1833.01Show/hide
Query:  WGGQLAGRDLWAYSS---DYLN----AFHVGGGRRLAEDYLRGQMSDHE-KRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQ
        WG  L  R++W+Y +   D ++    A  V G    A+  L      H+     W+PP    +K+N DA++  D   VG G V+R A+GEV +A CL L+
Subjt:  WGGQLAGRDLWAYSS---DYLN----AFHVGGGRRLAEDYLRGQMSDHE-KRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQ

Query:  RCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVE-RVWLEE
          + VD+AE   +   +++A +  F    +ETD +++   L       + +G++I+++  +     +    F  R GN AAH LA L+ SY + RVW+EE
Subjt:  RCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVE-RVWLEE

Query:  WPSEIS
         PSEIS
Subjt:  WPSEIS

XP_021841246.1 uncharacterized protein LOC110781352 [Spinacia oleracea]2.6e-1932.92Show/hide
Query:  HEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDV
        H     W PP    LK+N+D ++  D G  G G ++R   G V  AACL +   W V + E   +  G++LA Q G  D VVE+D L+++K+++GE+ D 
Subjt:  HEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDV

Query:  SEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERVWLEEWPSEISDVLS
          +G++  E+R I   +D+   +   R+ N A H +A     +  RVW+   PS + D+++
Subjt:  SEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERVWLEEWPSEISDVLS

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]8.5e-2637.07Show/hide
Query:  SWGGQLAGRDLWAYSSDYLNAFHVGGGRRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDL
        S GG L+  DL ++S +YL  +     +R +   L   +    +  +WRPP    LK+N+DA+ R ++   G G ++R + G V++ A   L R   VD 
Subjt:  SWGGQLAGRDLWAYSSDYLNAFHVGGGRRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDL

Query:  AEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPW-DNGKVLFTPRQGNKAAHVLASLAFSYVE-RVWLEEWPSEIS
         EG+ VY+G+ LA + GF  F +ETDSLR+  +L  +  D SEVG+L   ++  L    +     FT R GN  AH+LA LA +    ++W+EEWP EIS
Subjt:  AEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPW-DNGKVLFTPRQGNKAAHVLASLAFSYVE-RVWLEEWPSEIS

Query:  DVLSL
         VL++
Subjt:  DVLSL

TrEMBL top hitse value%identityAlignment
A0A2P5ENY9 Ribonuclease H-like domain containing protein4.9e-1933.85Show/hide
Query:  YLNAFHVGGGRRLAEDYLRGQMSD------HEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQ
        Y+     GGG  L E     Q+ D      ++K   W PP +  LKLN+DA+V    G +G G V+R   G+V  A    ++  +   +AE + + +G+ 
Subjt:  YLNAFHVGGGRRLAEDYLRGQMSD------HEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQ

Query:  LARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERV-WLEEWPSEISDVLS
         A++      +VETDSLR+V  L G     +E  L++D+V+ +L   D+G  +F  R GN+A+H LA  A S    + WLEE P  IS +++
Subjt:  LARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERV-WLEEWPSEISDVLS

A0A5C7ITL2 RNase H domain-containing protein4.1e-1830.57Show/hide
Query:  DLWAYSSDYLNAFHVGGGRRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKG
        D+W +++ +++ F V       E   +  +S   K   W PP V   K+N DA+ R   G  G GCV+R + G V  + C     C+   +AE   +  G
Subjt:  DLWAYSSDYLNAFHVGGGRRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKG

Query:  VQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVER-VWLEEWPSEISDVL
         +LA +LG    V+E+D+L +V+ +  +   +SEVG++I ++  I   +    + F PR  NK  H LA LA  +V R VW+ + P  +  ++
Subjt:  VQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVER-VWLEEWPSEISDVL

A0A6J1DBJ7 uncharacterized protein LOC1110189734.1e-2637.07Show/hide
Query:  SWGGQLAGRDLWAYSSDYLNAFHVGGGRRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDL
        S GG L+  DL ++S +YL  +     +R +   L   +    +  +WRPP    LK+N+DA+ R ++   G G ++R + G V++ A   L R   VD 
Subjt:  SWGGQLAGRDLWAYSSDYLNAFHVGGGRRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDL

Query:  AEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPW-DNGKVLFTPRQGNKAAHVLASLAFSYVE-RVWLEEWPSEIS
         EG+ VY+G+ LA + GF  F +ETDSLR+  +L  +  D SEVG+L   ++  L    +     FT R GN  AH+LA LA +    ++W+EEWP EIS
Subjt:  AEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPW-DNGKVLFTPRQGNKAAHVLASLAFSYVE-RVWLEEWPSEIS

Query:  DVLSL
         VL++
Subjt:  DVLSL

A0A803Q6Y1 Uncharacterized protein4.1e-1837.18Show/hide
Query:  VWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGL
        VW+PPP++KLK+N+DA+   +T  +G G V+R   GEV  A    +Q C+  D  E   ++  +  A Q   +  +VETD+LR+  +L+  L+D+S    
Subjt:  VWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGL

Query:  LIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERV-WLEEWPSEISDVL
        LI +VR +L  +    V    RQ N+AAH LA  A    E V W+ E P  I  V+
Subjt:  LIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERV-WLEEWPSEISDVL

V4UMR3 RNase H domain-containing protein (Fragment)6.4e-1934.64Show/hide
Query:  WRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLL
        W+ PP S  K+N+DA+V       G G ++  + GEV  A+  ++     ++  E   V+ G+QL   +G A  ++E+DS  +V +++ ++H   EVG L
Subjt:  WRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLL

Query:  IDEVRGILHPWDNG-KVLFTPRQGNKAAHVLASLAF-SYVERVWLEEWPSEIS
        I +V+ +L   ++  +V F PR  N+ AH L+ LA  + +E+VWLEE P+EI+
Subjt:  IDEVRGILHPWDNG-KVLFTPRQGNKAAHVLASLAF-SYVERVWLEEWPSEIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.0e-1026.11Show/hide
Query:  RRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDS
        RR  E    G   +      W+ PP   +K N DA+ + +    G G +LR   G V      +L R  +V  AE   +   V    +  +   + E+D+
Subjt:  RRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDS

Query:  LRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSY
          LV +L+ +      +   +++++ +LH ++  K  FTPR GNK A  +A  + S+
Subjt:  LRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSY

AT4G29090.1 Ribonuclease H-like superfamily protein4.5e-0929.71Show/hide
Query:  WRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLL
        WRPPP   +K N DA+   D    G G VLR   GEV      +L +  SV  AE   +   V    +  +   + E+DS  L++IL+ +      +   
Subjt:  WRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKGVQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLL

Query:  IDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYV
        I +++ +L  +   K +F PR+GN  A  +A  + S++
Subjt:  IDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGGGGTGGTCAGTTAGCCGGTCGAGATCTCTGGGCATATTCGAGTGATTACCTTAATGCCTTCCATGTTGGTGGGGGGCGTCGTCTAGCAGAGGACTACTTACG
AGGCCAGATGAGTGACCATGAGAAACGCTGTGTATGGAGACCGCCTCCTGTTAGTAAGCTTAAACTTAATATCGATGCTTCTGTCAGGCCTGACACAGGAGAAGTTGGAG
GTGGTTGTGTGCTGCGTAGGGCTGTTGGGGAGGTCTTTATGGCGGCCTGTTTGAGCTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGTGGTGTATAAAGGG
GTCCAACTCGCTCGGCAGCTGGGGTTTGCAGATTTTGTGGTAGAGACTGATTCTCTGAGGTTGGTCAAAATCCTGCATGGTGAGTTGCATGATGTGTCGGAAGTGGGACT
GCTGATAGATGAAGTCCGAGGAATCCTCCATCCTTGGGACAACGGTAAGGTTTTGTTTACACCACGACAGGGGAACAAGGCGGCGCATGTCTTGGCGAGCTTGGCCTTTT
CATATGTTGAGCGTGTTTGGCTGGAAGAATGGCCGAGCGAGATCTCTGATGTCCTAAGTTTGTTGAGGTCATGTGTCTGTGCACTGGTTTTGTCCTTTGAGCTTGCTCTG
GTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTGGGGTGGTCAGTTAGCCGGTCGAGATCTCTGGGCATATTCGAGTGATTACCTTAATGCCTTCCATGTTGGTGGGGGGCGTCGTCTAGCAGAGGACTACTTACG
AGGCCAGATGAGTGACCATGAGAAACGCTGTGTATGGAGACCGCCTCCTGTTAGTAAGCTTAAACTTAATATCGATGCTTCTGTCAGGCCTGACACAGGAGAAGTTGGAG
GTGGTTGTGTGCTGCGTAGGGCTGTTGGGGAGGTCTTTATGGCGGCCTGTTTGAGCTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGTGGTGTATAAAGGG
GTCCAACTCGCTCGGCAGCTGGGGTTTGCAGATTTTGTGGTAGAGACTGATTCTCTGAGGTTGGTCAAAATCCTGCATGGTGAGTTGCATGATGTGTCGGAAGTGGGACT
GCTGATAGATGAAGTCCGAGGAATCCTCCATCCTTGGGACAACGGTAAGGTTTTGTTTACACCACGACAGGGGAACAAGGCGGCGCATGTCTTGGCGAGCTTGGCCTTTT
CATATGTTGAGCGTGTTTGGCTGGAAGAATGGCCGAGCGAGATCTCTGATGTCCTAAGTTTGTTGAGGTCATGTGTCTGTGCACTGGTTTTGTCCTTTGAGCTTGCTCTG
GTTGTTTGA
Protein sequenceShow/hide protein sequence
MSWGGQLAGRDLWAYSSDYLNAFHVGGGRRLAEDYLRGQMSDHEKRCVWRPPPVSKLKLNIDASVRPDTGEVGGGCVLRRAVGEVFMAACLSLQRCWSVDLAEGWVVYKG
VQLARQLGFADFVVETDSLRLVKILHGELHDVSEVGLLIDEVRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVERVWLEEWPSEISDVLSLLRSCVCALVLSFELAL
VV