; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007863 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007863
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S13
Genome locationchr9:6689031..6691236
RNA-Seq ExpressionLag0007863
SyntenyLag0007863
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9450663.1 hypothetical protein H6P81_010628 [Aristolochia fimbriata]2.9e-2256Show/hide
Query:  SLPYTFTLPLLALL------QNWESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKD
        +LPY  T P    +      +N      KG  P   +Q   L    +G P   QVKS+TGSKILRILK+HGL PEI +DLYHLIKK V+I+KHLERNRKD
Subjt:  SLPYTFTLPLLALL------QNWESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKD

Query:  KDSKFRLILVESRIHCLTRTLRSIR
        KDSKFRLILVESRIH L R ++ I+
Subjt:  KDSKFRLILVESRIHCLTRTLRSIR

PPD86677.1 hypothetical protein GOBAR_DD16380 [Gossypium barbadense]7.8e-2389.39Show/hide
Query:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        QVKSVTGSKILRILKAHGL PEI +DLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIHCL R
Subjt:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

XP_010440625.1 PREDICTED: 40S ribosomal protein S13-2-like [Camelina sativa]5.0e-2266.67Show/hide
Query:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        ES+    K+    +Q   +     G P   QVKSVTGSKILRILKAHGL PEI +DLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

XP_010450246.1 PREDICTED: 40S ribosomal protein S13-2-like [Camelina sativa]2.9e-2259.48Show/hide
Query:  SLPYTFTLPLLALLQNW---ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS
        +LPY  T P    + +    ES+    K+    +Q   +     G P   QVKSVTGSKILRILKAHGL PEI +DLYHLIKK V+I+KHLERNRKDKDS
Subjt:  SLPYTFTLPLLALLQNW---ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS

Query:  KFRLILVESRIHCLTR
        KFRLILVESRIH L R
Subjt:  KFRLILVESRIHCLTR

XP_020217345.1 40S ribosomal protein S13 [Cajanus cajan]2.3e-2290.91Show/hide
Query:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        QVKSVTGSKILRILKAHGLTPEI +DLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

TrEMBL top hitse value%identityAlignment
A0A0D9X3V7 Uncharacterized protein6.4e-2349.35Show/hide
Query:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS
        +LPY  T P  +     + E M+ K  K+ +  +Q   +     G PL   VKSVTGSKILRILKAHGL PEI +DLY LIKK V+I+KHLERNRKDKDS
Subjt:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS

Query:  KFRLILVESRIHCLTRTLRSIRTEKRLTETMAHKDEAPKAIRDFLQPVLPTENS
        KFRLILVESRIH   R  R  +  K+L  T  ++      +  F+  +LP+ +S
Subjt:  KFRLILVESRIHCLTRTLRSIRTEKRLTETMAHKDEAPKAIRDFLQPVLPTENS

A0A0E0AQ70 Uncharacterized protein8.4e-2347.13Show/hide
Query:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS
        +LPY  T P  L     + E M+ K  K+ +  +Q   +     G PL   VKSVTGSKILRILKAHGL PEI +DLY LIKK V+I+KHLERNRKDKDS
Subjt:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS

Query:  KFRLILVESRIHCLTRTLRSIR----TEKRLTETMAHKDEAPKAIRDFLQPVLPTENSGIVYAPIQAKNFELKT
        KFRLILVESRIH L R  +  +    T K LT +++ +  A  ++  F  P  P   S    +P+    F   T
Subjt:  KFRLILVESRIHCLTRTLRSIR----TEKRLTETMAHKDEAPKAIRDFLQPVLPTENSGIVYAPIQAKNFELKT

A0A0E0I6N3 Uncharacterized protein8.4e-2347.13Show/hide
Query:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS
        +LPY  T P  L     + E M+ K  K+ +  +Q   +     G PL   VKSVTGSKILRILKAHGL PEI +DLY LIKK V+I+KHLERNRKDKDS
Subjt:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS

Query:  KFRLILVESRIHCLTRTLRSIR----TEKRLTETMAHKDEAPKAIRDFLQPVLPTENSGIVYAPIQAKNFELKT
        KFRLILVESRIH L R  +  +    T K LT +++ +  A  ++  F  P  P   S    +P+    F   T
Subjt:  KFRLILVESRIHCLTRTLRSIR----TEKRLTETMAHKDEAPKAIRDFLQPVLPTENSGIVYAPIQAKNFELKT

A0A0E0QDN1 Uncharacterized protein8.4e-2347.13Show/hide
Query:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS
        +LPY  T P  L     + E M+ K  K+ +  +Q   +     G PL   VKSVTGSKILRILKAHGL PEI +DLY LIKK V+I+KHLERNRKDKDS
Subjt:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS

Query:  KFRLILVESRIHCLTRTLRSIR----TEKRLTETMAHKDEAPKAIRDFLQPVLPTENSGIVYAPIQAKNFELKT
        KFRLILVESRIH L R  +  +    T K LT +++ +  A  ++  F  P  P   S    +P+    F   T
Subjt:  KFRLILVESRIHCLTRTLRSIR----TEKRLTETMAHKDEAPKAIRDFLQPVLPTENSGIVYAPIQAKNFELKT

A0A151TJI5 40S ribosomal protein S131.1e-2290.91Show/hide
Query:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        QVKSVTGSKILRILKAHGLTPEI +DLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

SwissProt top hitse value%identityAlignment
P59223 40S ribosomal protein S13-16.6e-2566.67Show/hide
Query:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        ES+    K+    +Q   +     G P   QVKSVTGSKILRILKAHGL PEI +DLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

P59224 40S ribosomal protein S13-26.6e-2566.67Show/hide
Query:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        ES+    K+    +Q   +     G P   QVKSVTGSKILRILKAHGL PEI +DLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

P62302 40S ribosomal protein S134.3e-2487.88Show/hide
Query:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        QV SVTGSKILRILKAHGL PEI +DLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  QVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

Q05761 40S ribosomal protein S131.1e-2459.2Show/hide
Query:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS
        +LPY  T P  L     + E M+ K  K+ +  +Q   L     G PL   VKSVTGSKILRILKAHGL PEI +DLY LIKK V+I+KHLERNRKDKDS
Subjt:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS

Query:  KFRLILVESRIHCLTRTLRSIRTEK
        KFRLILVESRIH L R  +  RT+K
Subjt:  KFRLILVESRIHCLTRTLRSIRTEK

Q69UI1 40S ribosomal protein S13-23.3e-2458.4Show/hide
Query:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS
        +LPY  T P  L     + E M+ K  K+ +  +Q   +     G PL   VKSVTGSKILRILKAHGL PEI +DLY LIKK V+I+KHLERNRKDKDS
Subjt:  SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDS

Query:  KFRLILVESRIHCLTRTLRSIRTEK
        KFRLILVESRIH L R  +  RT+K
Subjt:  KFRLILVESRIHCLTRTLRSIRTEK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S154.7e-2666.67Show/hide
Query:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        ES+    K+    +Q   +     G P   QVKSVTGSKILRILKAHGL PEI +DLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR

AT4G00100.1 ribosomal protein S13A4.7e-2666.67Show/hide
Query:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR
        ES+    K+    +Q   +     G P   QVKSVTGSKILRILKAHGL PEI +DLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L R
Subjt:  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGAATTGTAGTATCCCTGCCTTATACATTCACTTTGCCTCTCTTAGCACTACTACAAAATTGGGAATCCATGATGCCAAAAGGAAAGGAACCAAGGGGTGTCAA
TCAAACACCAACTTTGAAACACCAACTTGATGGCTTTCCTTTGACCATTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAACTC
CTGAAATCTCGAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAAAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTG
GAAAGCAGGATCCATTGCCTGACCCGGACACTCAGATCTATTCGTACAGAGAAAAGACTAACGGAAACAATGGCCCATAAGGATGAAGCTCCCAAGGCAATCAGAGACTT
TTTACAGCCAGTTCTCCCAACCGAGAATTCAGGCATCGTTTACGCCCCGATCCAAGCTAAGAATTTCGAGTTAAAGACAAGACTGATTCAGATGGCGCGAGACAATTCGT
TTAAGGGACACCCTTCGGAGGATCCACATTCGCATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGAATTGTAGTATCCCTGCCTTATACATTCACTTTGCCTCTCTTAGCACTACTACAAAATTGGGAATCCATGATGCCAAAAGGAAAGGAACCAAGGGGTGTCAA
TCAAACACCAACTTTGAAACACCAACTTGATGGCTTTCCTTTGACCATTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAACTC
CTGAAATCTCGAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAAAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTG
GAAAGCAGGATCCATTGCCTGACCCGGACACTCAGATCTATTCGTACAGAGAAAAGACTAACGGAAACAATGGCCCATAAGGATGAAGCTCCCAAGGCAATCAGAGACTT
TTTACAGCCAGTTCTCCCAACCGAGAATTCAGGCATCGTTTACGCCCCGATCCAAGCTAAGAATTTCGAGTTAAAGACAAGACTGATTCAGATGGCGCGAGACAATTCGT
TTAAGGGACACCCTTCGGAGGATCCACATTCGCATCTGTGA
Protein sequenceShow/hide protein sequence
MLRIVVSLPYTFTLPLLALLQNWESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILRILKAHGLTPEISKDLYHLIKKVVSIKKHLERNRKDKDSKFRLILV
ESRIHCLTRTLRSIRTEKRLTETMAHKDEAPKAIRDFLQPVLPTENSGIVYAPIQAKNFELKTRLIQMARDNSFKGHPSEDPHSHL