; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007903 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007903
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:7624471..7625166
RNA-Seq ExpressionLag0007903
SyntenyLag0007903
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG71533.1 hypothetical protein EZV62_000112 [Acer yangbiense]1.6e-1126.38Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQI-CDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR
        C IC  K E+  HAL  C   K++ C   F   D+ +     F + ++  ++ L  +EFE +CI+ W +W+ RN   HN  I+      +W   +  D R
Subjt:  CGICKMKVESVDHALCGCKRSKQI-CDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR

Query:  GIVK----ANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDSVNAIKM
        G  +       E +   RW      G V + TD  +N  +K  G+G                + P   E  A++ GLR     + SK  + SD++  ++ 
Subjt:  GIVK----ANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDSVNAIKM

Query:  ITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
        I      +S+V   +  I  ++  F  +SF +VPR
Subjt:  ITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.6e-1127.03Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR-
        C +C  ++E+ DHAL  CKR+K++ ++L  +   Q    N+  D +++L   L   +F+ V + +WAIWNDRN     ++I   +   +W++ Y  D + 
Subjt:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR-

Query:  ------GIVKANSEPIAQCR-----WCPTVQAGEVALYTDGVV--NPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHG
              G  +   +  +  R     W P   AG + +  D     + +  G+G    N+ +G  ++    SH PL  E  AL  G
Subjt:  ------GIVKANSEPIAQCR-----WCPTVQAGEVALYTDGVV--NPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.9e-1826.56Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVW--LTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDM
        C IC  + ES+ HA   CKR++QI   LF  + + +  ++N +   +W  LT  L+ ++     I  W IWNDRN   H +++   +  CEW+  + +  
Subjt:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVW--LTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDM

Query:  RGIVKANSEPIAQCRWCPTVQ------AGEVALYTDGVVNPYVKGVG---YGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDS
             +N  P  Q    P VQ      +  + L TD          G     +   L  A  +  P   +PL  E+  ++ GL+     + +   V SDS
Subjt:  RGIVKANSEPIAQCRWCPTVQ------AGEVALYTDGVVNPYVKGVG---YGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDS

Query:  VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
        + AI++I   +    D  +W+++I++L   F  +SF++  R
Subjt:  VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

XP_024178556.2 uncharacterized protein LOC112184522 [Rosa chinensis]2.8e-1125.7Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQN-NFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCE----------
        C +C   VE+V+H  C C  +++I           IP+ + ++ D  +   N L    FEK+ ++LW IW +RND         W R C           
Subjt:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQN-NFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCE----------

Query:  --WVIEYWEDMRGIVKANSE-PIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA-----DNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHIS
          W  EY +  +  V  +   P  Q RW P    G + L  DG     ++  G G            A         +PL  E+ AL +GL  LH ++++
Subjt:  --WVIEYWEDMRGIVKANSE-PIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA-----DNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHIS

Query:  KAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
        K +V +D + A++ I  + +  S++   I  I+ LV    +++  + PR
Subjt:  KAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

XP_024956542.1 uncharacterized protein LOC112498908 [Citrus sinensis]2.8e-1124.48Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYT---HNQEIMSWQRHCEWVIEYWED
        C +CKM +E+V HAL  CK +K++  +    +D Q     +    +  +     + + +   ++LWA WN RN +      +   S     E V+E ++ 
Subjt:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYT---HNQEIMSWQRHCEWVIEYWED

Query:  MR---GIVKANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA----DNQLRGALELFDPISHAPLA-TEVNALIHGLRLLHRVHISKAMVCSDS
        ++    +     + +AQ  W P  Q G V + TD   N      G GA    +N    A  +     H  +A  E  A+  GL++    H+   ++ SDS
Subjt:  MR---GIVKANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA----DNQLRGALELFDPISHAPLA-TEVNALIHGLRLLHRVHISKAMVCSDS

Query:  VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
           + ++       S+++  +L+I+ L  +FD++S  Y  R
Subjt:  VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

TrEMBL top hitse value%identityAlignment
A0A5C7IQ65 RNase H domain-containing protein7.8e-1226.38Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQI-CDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR
        C IC  K E+  HAL  C   K++ C   F   D+ +     F + ++  ++ L  +EFE +CI+ W +W+ RN   HN  I+      +W   +  D R
Subjt:  CGICKMKVESVDHALCGCKRSKQI-CDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR

Query:  GIVK----ANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDSVNAIKM
        G  +       E +   RW      G V + TD  +N  +K  G+G                + P   E  A++ GLR     + SK  + SD++  ++ 
Subjt:  GIVK----ANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDSVNAIKM

Query:  ITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
        I      +S+V   +  I  ++  F  +SF +VPR
Subjt:  ITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

A0A6J1CTE3 uncharacterized protein LOC1110145787.8e-1227.03Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR-
        C +C  ++E+ DHAL  CKR+K++ ++L  +   Q    N+  D +++L   L   +F+ V + +WAIWNDRN     ++I   +   +W++ Y  D + 
Subjt:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMR-

Query:  ------GIVKANSEPIAQCR-----WCPTVQAGEVALYTDGVV--NPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHG
              G  +   +  +  R     W P   AG + +  D     + +  G+G    N+ +G  ++    SH PL  E  AL  G
Subjt:  ------GIVKANSEPIAQCR-----WCPTVQAGEVALYTDGVV--NPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHG

A0A6J1DX30 uncharacterized protein LOC1110248744.3e-1826.56Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVW--LTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDM
        C IC  + ES+ HA   CKR++QI   LF  + + +  ++N +   +W  LT  L+ ++     I  W IWNDRN   H +++   +  CEW+  + +  
Subjt:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVW--LTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDM

Query:  RGIVKANSEPIAQCRWCPTVQ------AGEVALYTDGVVNPYVKGVG---YGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDS
             +N  P  Q    P VQ      +  + L TD          G     +   L  A  +  P   +PL  E+  ++ GL+     + +   V SDS
Subjt:  RGIVKANSEPIAQCRWCPTVQ------AGEVALYTDGVVNPYVKGVG---YGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDS

Query:  VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
        + AI++I   +    D  +W+++I++L   F  +SF++  R
Subjt:  VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

A0A803P5M6 Uncharacterized protein2.8e-0925.49Show/hide
Query:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRG
        C +C    ES+ HAL  CK +K I  +   R+D          D +  L+   Q  +FE +  VLW IW DRN   H  +        ++  +++ED   
Subjt:  CGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRG

Query:  IVKANSEPIAQC-----------------RWCPTVQAGEVALYTDGVVNPYVKGVGYGA---DNQ--LRGALELFDPISHAPLATEVNALIHGLRLLHRV
          K  + P+A                   RW P V+ G   L  D   N   K +G GA   D Q  +  AL      S      E  AL H +  + + 
Subjt:  IVKANSEPIAQC-----------------RWCPTVQAGEVALYTDGVVNPYVKGVGYGA---DNQ--LRGALELFDPISHAPLATEVNALIHGLRLLHRV

Query:  HISKAMVCSDS---VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
              + +D+    NA+  +   +   SD+   I+ IR L+++F  +   +V R
Subjt:  HISKAMVCSDS---VNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

A0A803PJK4 Uncharacterized protein3.9e-1124.29Show/hide
Query:  MCGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWED--
        +C +C+   ES+ HAL  CKR+K++       +D  I   + F D     +     +E E+   +LW+IW +RN   H  +    +      + Y  +  
Subjt:  MCGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWED--

Query:  ---------MRGIVKANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA-----DNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKA
                 +R  V  N+EP    +W     +G + L TD  V+   +  G+GA     D Q+  A+    P    P   E  AL + L+ L  +++   
Subjt:  ---------MRGIVKANSEPIAQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGA-----DNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKA

Query:  MVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR
         + +DS+  +K +       SD H  +  I  L++ F  +  ++V R
Subjt:  MVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAAFDNLSFNYVPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGTATCTGCAAAATGAAAGTGGAGAGTGTTGACCATGCATTATGTGGTTGCAAAAGGTCCAAGCAAATATGTGATGTGTTGTTTCGACGAGTGGATAGTCAAAT
ACCCATTCAAAATAATTTCGCTGATCGAATTGTATGGCTCACAAACCATCTTCAAGATGAGGAATTTGAGAAAGTTTGCATTGTGCTTTGGGCCATTTGGAATGATAGAA
ATGACTATACTCATAATCAGGAGATTATGTCGTGGCAAAGGCACTGTGAGTGGGTCATTGAATATTGGGAAGATATGAGGGGTATCGTGAAAGCCAATTCTGAGCCTATT
GCGCAGTGTCGTTGGTGTCCTACTGTGCAAGCGGGCGAGGTTGCTCTTTATACGGATGGGGTAGTAAACCCGTATGTGAAAGGAGTGGGATATGGAGCTGACAATCAATT
ACGTGGGGCATTGGAACTTTTTGATCCCATCTCGCATGCTCCACTTGCAACAGAAGTCAACGCCTTAATTCATGGCCTTCGTTTGCTTCACCGCGTGCACATTTCCAAGG
CTATGGTGTGTTCGGATTCTGTTAATGCAATAAAGATGATCACAGGAGCCGTCCAAATTACATCAGATGTGCATCATTGGATTCTACAAATTCGTAGTCTAGTTGCAGCT
TTCGATAATTTATCGTTCAATTATGTGCCAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGTATCTGCAAAATGAAAGTGGAGAGTGTTGACCATGCATTATGTGGTTGCAAAAGGTCCAAGCAAATATGTGATGTGTTGTTTCGACGAGTGGATAGTCAAAT
ACCCATTCAAAATAATTTCGCTGATCGAATTGTATGGCTCACAAACCATCTTCAAGATGAGGAATTTGAGAAAGTTTGCATTGTGCTTTGGGCCATTTGGAATGATAGAA
ATGACTATACTCATAATCAGGAGATTATGTCGTGGCAAAGGCACTGTGAGTGGGTCATTGAATATTGGGAAGATATGAGGGGTATCGTGAAAGCCAATTCTGAGCCTATT
GCGCAGTGTCGTTGGTGTCCTACTGTGCAAGCGGGCGAGGTTGCTCTTTATACGGATGGGGTAGTAAACCCGTATGTGAAAGGAGTGGGATATGGAGCTGACAATCAATT
ACGTGGGGCATTGGAACTTTTTGATCCCATCTCGCATGCTCCACTTGCAACAGAAGTCAACGCCTTAATTCATGGCCTTCGTTTGCTTCACCGCGTGCACATTTCCAAGG
CTATGGTGTGTTCGGATTCTGTTAATGCAATAAAGATGATCACAGGAGCCGTCCAAATTACATCAGATGTGCATCATTGGATTCTACAAATTCGTAGTCTAGTTGCAGCT
TTCGATAATTTATCGTTCAATTATGTGCCAAGGTAA
Protein sequenceShow/hide protein sequence
MCGICKMKVESVDHALCGCKRSKQICDVLFRRVDSQIPIQNNFADRIVWLTNHLQDEEFEKVCIVLWAIWNDRNDYTHNQEIMSWQRHCEWVIEYWEDMRGIVKANSEPI
AQCRWCPTVQAGEVALYTDGVVNPYVKGVGYGADNQLRGALELFDPISHAPLATEVNALIHGLRLLHRVHISKAMVCSDSVNAIKMITGAVQITSDVHHWILQIRSLVAA
FDNLSFNYVPR