; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007944 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007944
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr9:8809565..8816400
RNA-Seq ExpressionLag0007944
SyntenyLag0007944
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-2061.29Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC +ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+ S +PSRMKRK S+ INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-2062.37Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.3e-2062.37Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.6e-2061.29Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M + + K F E N D K+ S +PSRMKRK S+ INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]5.1e-2062.37Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK SI INT+GS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.4e-2061.29Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC +ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+ S +PSRMKRK S+ INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

A0A5A7TQ06 Retrotransposon gag protein1.1e-2062.37Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

A0A5A7U974 Retrotransposon gag protein3.2e-2062.37Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC +ST+TR SAF+RLS+S SKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSR+KRK SI INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

A0A5D3BBF9 Gag protease polyprotein1.1e-2062.37Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

A0A5D3D5Q0 Gag protease polyprotein2.4e-2062.37Show/hide
Query:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS
        +SM   EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK SI INT+GS
Subjt:  MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTATTCTCATAAATACAGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCCCTAAGTTTGAAGGTTCTCTCCTC
CAAGTCGAAGGTTCTCACGTTGCTGCGATGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTC
CAAGTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTGGCCGTAGTTCCATCTCTCCAATTCCTTCTCTCCAAGTTCA
AAGGTTCTCACGCATTTCGCTACAGTTCATTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCG
AAGGTTCTCTCACGTTGCTTCGCTGCAATTATTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCATTTCGC
TACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTTCTTCCTACAAGTTTGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCCAAGTAC
GAAGGTTCTTACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGCTTCGTTGCAGTTCCTT
CCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTAATTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCA
CGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTTGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGA
AGGCGCTTCTCTTCACTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTTCGTTGCTCCTTCTCCAAGTTCGAAG
GCGCTTCTCTCCGCTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTACTCCAAGTTCGAAGGCGCTTCTCTCCGCTACTCCTTCTCCAAGTTCGAAGGT
GCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGA
GGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCGCGTTCCGCTGCATCTTCAAATGTTGGCAGTTGACGGCGTC
CGCTTCGCTTCATCTTCAAAAATTGACTGTGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCCTGCAGGTTACTCAG
ATCACCCAATAAAATGGGGACTGGTCTAGCAGAAGTGCATCACTGTTACTCAGATCACCCAATAAAATGGGGACTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACC
CCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGAAGTGCATCACTGTAGGCAAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTA
GCAGAAGTGCATCACTGTAGGCAAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGAAATCACTGCAAGCGAATTTGGTTCAGGACCCAAC
CTATACCGATCTTTTTAAACGGGTTCAAGATCAAACCACTGTGATCCTTTTAACCGGGTTCAGGATCAAACCACTACAAATCCTTTTTCGGGTTCAGGATCAAACCACTC
ACTCAATTCCCAAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCTCAAGATCCAGAGTCGTTAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGA
TCCAGAGTCGTTAGAATCCAAAGAGTCCAGAGAATTCAGAGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGATTTGAAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTATTCTCATAAATACAGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCCCTAAGTTTGAAGGTTCTCTCCTC
CAAGTCGAAGGTTCTCACGTTGCTGCGATGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTC
CAAGTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTGGCCGTAGTTCCATCTCTCCAATTCCTTCTCTCCAAGTTCA
AAGGTTCTCACGCATTTCGCTACAGTTCATTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCG
AAGGTTCTCTCACGTTGCTTCGCTGCAATTATTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCATTTCGC
TACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTTCTTCCTACAAGTTTGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCCAAGTAC
GAAGGTTCTTACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGCTTCGTTGCAGTTCCTT
CCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTAATTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCA
CGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTTGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGA
AGGCGCTTCTCTTCACTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTTCGTTGCTCCTTCTCCAAGTTCGAAG
GCGCTTCTCTCCGCTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTACTCCAAGTTCGAAGGCGCTTCTCTCCGCTACTCCTTCTCCAAGTTCGAAGGT
GCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGA
GGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCGCGTTCCGCTGCATCTTCAAATGTTGGCAGTTGACGGCGTC
CGCTTCGCTTCATCTTCAAAAATTGACTGTGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCCTGCAGGTTACTCAG
ATCACCCAATAAAATGGGGACTGGTCTAGCAGAAGTGCATCACTGTTACTCAGATCACCCAATAAAATGGGGACTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACC
CCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGAAGTGCATCACTGTAGGCAAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTA
GCAGAAGTGCATCACTGTAGGCAAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGAAATCACTGCAAGCGAATTTGGTTCAGGACCCAAC
CTATACCGATCTTTTTAAACGGGTTCAAGATCAAACCACTGTGATCCTTTTAACCGGGTTCAGGATCAAACCACTACAAATCCTTTTTCGGGTTCAGGATCAAACCACTC
ACTCAATTCCCAAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCTCAAGATCCAGAGTCGTTAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGA
TCCAGAGTCGTTAGAATCCAAAGAGTCCAGAGAATTCAGAGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGATTTGAAGACTAG
Protein sequenceShow/hide protein sequence
MSMVATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSHALRYSSFLPKFEGSLL
QVEGSHVAAMQFLLSKFKGSHAFRYSSFSPSTKVLSSKSKVLTLLHCSSFLQVRRFSRCLAVVPSLQFLLSKFKGSHAFRYSSFPPSSKVLTLLRRSSFSPSTKVLSSKS
KVLSRCFAAIISSKFEGFHALCCSSFSPSSKVLTHFATVHFLQVQRFSRASVKFLPTSLKVLTCFGEVPSSQVRRFLRASLQFLPPSSKFLPPNSKVSKVLTRCASLQFL
PPSSKVLMRFAAQFLPPSSKVLMRLIATFLQVRRFSHALLQFLPPSSKVLSRASLAPSPSLKALLSTAPSPSSKALLFTTPSPSSKALLSAATSPSSKALLFVAPSPSSK
ALLSAATSPSSKALLSTTPTPSSKALLSATPSPSSKVLLSTAPSPSSKALLSTAPSPSSKVLLSTPPFEGSPLRFSFSKFEGSPLLLFKCLAAVDGRVPLHLQMLAVDGV
RFASSSKIDCDEVTASESDDDRCRRVESGDHPCRLLRSPNKMGTGLAEVHHCYSDHPIKWGLECITEGESGDYPCRLLRSPNKMGTGLAEVHHCRQIWLLRSPNKMGTGL
AEVHHCRQIWLLRSPNKMGTGLAGVKSLQANLVQDPTYTDLFKRVQDQTTVILLTGFRIKPLQILFRVQDQTTHSIPKPEAERAESRAFSQDPESLARGREGRVQSILPR
SRVVRIQRVQRIQRFEIQNSKDSRLRRFED