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Lag0007972 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007972
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr9:9189421..9189738
RNA-Seq ExpressionLag0007972
SyntenyLag0007972
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048199.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.6e-1776.19Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + SST
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.4e-1559.09Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + SST    ++I+         D    T+I
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII

KAE8649781.1 hypothetical protein Csa_012983 [Cucumis sativus]9.9e-1776.19Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST
        NPS  +S LF LSN CNLVP+RLDS NYVLWK+Q+SSILKAHSLFGHIDDSLP P K + SST
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-1776.19Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + SST
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST

TYK11141.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.1e-1559.09Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K   SST    ++I+         D    T+I
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII

TrEMBL top hitse value%identityAlignment
A0A0A0L1J8 Retrotran_gag_3 domain-containing protein1.4e-1674.6Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST
        NPS  +S LF LSN CNLVP+RLDS NYVLWK+Q+SS LKAHSLFGHIDDSLP P K + SST
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST

A0A5A7U426 Putative mitochondrial protein1.3e-1776.19Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + SST
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST

A0A5A7UZE5 Putative mitochondrial protein2.6e-1559.09Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + SST    ++I+         D    T+I
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII

A0A5D3CCL2 Retrotransposon protein1.3e-1776.19Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + SST
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSST

A0A5D3CH60 Putative mitochondrial protein3.4e-1559.09Show/hide
Query:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII
        NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K   SST    ++I+         D    T+I
Subjt:  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTCCTCTTCGACTACCACTGTCAATCCCTCCTCAATGTCTTCTCCTCTATTTCATTTGTCAAATACATGCAATTTGGTGCCACTTCGCTTGGACTCTACTAA
TTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTTGGTCATATTGATGATTCTCTTCCCCAACCAAGCAAGTTTGTTCGTTCTTCAACCT
GGACAGACACCAATGACATAGACAACACCAACACCAACACCAGCGACACAGACAACACCGACACCACCATTATAGGGATCAGTCCTGATTATCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTCCTCTTCGACTACCACTGTCAATCCCTCCTCAATGTCTTCTCCTCTATTTCATTTGTCAAATACATGCAATTTGGTGCCACTTCGCTTGGACTCTACTAA
TTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTTGGTCATATTGATGATTCTCTTCCCCAACCAAGCAAGTTTGTTCGTTCTTCAACCT
GGACAGACACCAATGACATAGACAACACCAACACCAACACCAGCGACACAGACAACACCGACACCACCATTATAGGGATCAGTCCTGATTATCTCTAA
Protein sequenceShow/hide protein sequence
MASSSSTTTVNPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTIIGISPDYL