; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007994 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007994
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:9642858..9644087
RNA-Seq ExpressionLag0007994
SyntenyLag0007994
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-2250.85Show/hide
Query:  INILEDHQANRSIQE-----IIKSASRSSKKINKSTNQPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPI
        I +L++H  +R   E      IK+A++    + +S  QP+    I +     GNPKQH+AHF++TCE AGT+GD LVKQF+RTL GN FDWYT LEPE I
Subjt:  INILEDHQANRSIQE-----IIKSASRSSKKINKSTNQPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPI

Query:  DNWDQFEKELLNLFYSTR
        D+W+Q E++ LN FYSTR
Subjt:  DNWDQFEKELLNLFYSTR

KAA0051584.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2265.43Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K  + + K    GNPKQHIAHF++TCENAG++GD LV+QFIR+L GN+F+WYT LEPE ID+W Q EKE LN FYSTR
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

KAA0053464.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]9.4e-2364.2Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K  + + K    GNPKQH+AHF++TCE AGT+GD LVKQF+RTL GN FDWYT LEPE ID+W+Q E++ LN FYSTR
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

XP_022159413.1 uncharacterized protein LOC111025834 [Momordica charantia]2.5e-2366.67Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K    + K    GNPKQHIAHF++TCENAGT+GD LVKQF+RTL GN FDWYT LEPE I++W+Q EKE LN FYST+
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

XP_024162574.1 uncharacterized protein LOC112169754 [Rosa chinensis]5.5e-2365.43Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K  + E K    GNPKQHIAHF++TC N GT+GD LVKQF+R+L GN F+WYT LEPE ID+WDQ E+E LN FYSTR
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

TrEMBL top hitse value%identityAlignment
A0A5A7SKR0 Ty3-gypsy retrotransposon protein5.9e-2350.85Show/hide
Query:  INILEDHQANRSIQE-----IIKSASRSSKKINKSTNQPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPI
        I +L++H  +R   E      IK+A++    + +S  QP+    I +     GNPKQH+AHF++TCE AGT+GD LVKQF+RTL GN FDWYT LEPE I
Subjt:  INILEDHQANRSIQE-----IIKSASRSSKKINKSTNQPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPI

Query:  DNWDQFEKELLNLFYSTR
        D+W+Q E++ LN FYSTR
Subjt:  DNWDQFEKELLNLFYSTR

A0A5A7U8E4 Retrotransposon gag protein5.9e-2365.43Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K  + + K    GNPKQHIAHF++TCENAG++GD LV+QFIR+L GN+F+WYT LEPE ID+W Q EKE LN FYSTR
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

A0A5A7UE14 Retrotransposon protein putative ty3-gypsy sub-class4.6e-2364.2Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K  + + K    GNPKQH+AHF++TCE AGT+GD LVKQF+RTL GN FDWYT LEPE ID+W+Q E++ LN FYSTR
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

A0A5A7VFV7 Ty3-gypsy retrotransposon protein5.9e-2364.2Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K  + + K    GNPKQHIAHF++TCENA ++GD LV+QF+R+L GN+F+WYT LEPE IDNW+Q EKE LN FYSTR
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

A0A6J1DYQ8 uncharacterized protein LOC1110258341.2e-2366.67Show/hide
Query:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR
        QP K    + K    GNPKQHIAHF++TCENAGT+GD LVKQF+RTL GN FDWYT LEPE I++W+Q EKE LN FYST+
Subjt:  QPKKIAKIEAKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGAGGAAGCCATCCTTCATTTTATTCAGTCAGACTCACACTCAAAGAGGTCGATCCAAGAGATCATCAAGCCAGCAGGCCGATCAAAGAGATCAACAAGTCAAC
AGACCGATCTAAGAGATCATCAAGCCAACAAGCCGATCATCCAAGAAGATCAACAAGCCAACAGGCTGATCCAAGAGATCATCAAGCCAACAGGTCAATCAATATCCTAG
AAGATCATCAAGCCAACAGGTCGATCCAAGAGATCATCAAGTCAGCAAGCCGATCATCCAAAAAGATCAACAAATCAACAAATCAGCCCAAGAAGATCGCCAAGATAGAG
GCCAAAGTTTATATATTCGGCAATCCTAAACAACATATTGCTCACTTCCTCAAGACATGCGAGAACGCTGGTACTCAAGGGGACCCACTGGTCAAGCAGTTCATTCGAAC
ACTTACAGGAAATATCTTTGACTGGTACACTGTTCTAGAGCCTGAGCCAATAGACAATTGGGACCAATTCGAAAAAGAGTTGTTGAATCTCTTCTACAGCACCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGAGGAAGCCATCCTTCATTTTATTCAGTCAGACTCACACTCAAAGAGGTCGATCCAAGAGATCATCAAGCCAGCAGGCCGATCAAAGAGATCAACAAGTCAAC
AGACCGATCTAAGAGATCATCAAGCCAACAAGCCGATCATCCAAGAAGATCAACAAGCCAACAGGCTGATCCAAGAGATCATCAAGCCAACAGGTCAATCAATATCCTAG
AAGATCATCAAGCCAACAGGTCGATCCAAGAGATCATCAAGTCAGCAAGCCGATCATCCAAAAAGATCAACAAATCAACAAATCAGCCCAAGAAGATCGCCAAGATAGAG
GCCAAAGTTTATATATTCGGCAATCCTAAACAACATATTGCTCACTTCCTCAAGACATGCGAGAACGCTGGTACTCAAGGGGACCCACTGGTCAAGCAGTTCATTCGAAC
ACTTACAGGAAATATCTTTGACTGGTACACTGTTCTAGAGCCTGAGCCAATAGACAATTGGGACCAATTCGAAAAAGAGTTGTTGAATCTCTTCTACAGCACCAGATGA
Protein sequenceShow/hide protein sequence
MNRGSHPSFYSVRLTLKEVDPRDHQASRPIKEINKSTDRSKRSSSQQADHPRRSTSQQADPRDHQANRSINILEDHQANRSIQEIIKSASRSSKKINKSTNQPKKIAKIE
AKVYIFGNPKQHIAHFLKTCENAGTQGDPLVKQFIRTLTGNIFDWYTVLEPEPIDNWDQFEKELLNLFYSTR