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Lag0008003 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008003
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr9:9809539..9810123
RNA-Seq ExpressionLag0008003
SyntenyLag0008003
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH84017.1 zinc CCHC-type-like protein [Trifolium medium]4.8e-2541.86Show/hide
Query:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE
        GPW +D  LL+   I G ++ S +E    SFW+   DLP    +   AK LGN++G FE +D+ +  R  G  LRIR+ +++++PLKRG   ++  +G++
Subjt:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE

Query:  EWSAMKYEKLPDYCFACGRVGHMARDCDD
         W   KYE+LP++CFACGR+GH  RDC++
Subjt:  EWSAMKYEKLPDYCFACGRVGHMARDCDD

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]4.8e-2541.86Show/hide
Query:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE
        GPW +D  LL+   I G ++ S +E    SFW+   DLP    +   AK LGN++G FE +D+ +  R  G  LRIR+ +++++PLKRG   ++  +G++
Subjt:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE

Query:  EWSAMKYEKLPDYCFACGRVGHMARDCDD
         W   KYE+LP++CFACGR+GH  RDC++
Subjt:  EWSAMKYEKLPDYCFACGRVGHMARDCDD

TXG54013.1 hypothetical protein EZV62_019269 [Acer yangbiense]1.3e-2532.81Show/hide
Query:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK
        +EGGPW++D  LLV +E  G ++ + ++F++  FWI   +LP  CLNR+    LG +VG+ + +D  E     G  +RIR+ I+V  PLKRG+ + +G  
Subjt:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK

Query:  GEEEWSAMKYEKLPDYCFACGRVGHMARDC--DDKVALSRDKLLYGPPGLRMEFIPRQKNKGKNDMERKDNSNVKRWAKKAEEEIERKISKK
         +     + YE+LP++C+ CG++GH+ RDC  + K   S     +GP    M  + R ++KG  + +     + +  +    E +  K S K
Subjt:  GEEEWSAMKYEKLPDYCFACGRVGHMARDC--DDKVALSRDKLLYGPPGLRMEFIPRQKNKGKNDMERKDNSNVKRWAKKAEEEIERKISKK

XP_024953751.1 uncharacterized protein LOC112498094 [Citrus sinensis]3.7e-2538.19Show/hide
Query:  GGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGE
        GGPW +D AL+V  E  G     + +F H SFW+   D+P +C+ ++   ALG  +G+ E V+ D      G  LR+RI +++ +PLK+ + +    + E
Subjt:  GGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGE

Query:  EEW-SAMKYEKLPDYCFACGRVGHMARDCDDKVALSRDKLLYGP
        E+    + YE+LPD+CF CGR+GH  R+C    + S+D+L YGP
Subjt:  EEW-SAMKYEKLPDYCFACGRVGHMARDCDDKVALSRDKLLYGP

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.4e-2438.41Show/hide
Query:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK
        +  GPW +D  LL+  E+    + S ++     FW+H  +LP V +N+K  + +GN VG+F  +D ++     G ++RIR+ ++V++PL+RGM + + S 
Subjt:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK

Query:  GEEEWSAMKYEKLPDYCFACGRVGHMARDCDDKVALSR----DKLLYGPPGLRMEFIPRQKNKG
         E  W   KYE+LP YC+ CGR+GH  R+CDDK++ +     D L YG   LRM+ I   K+KG
Subjt:  GEEEWSAMKYEKLPDYCFACGRVGHMARDCDDKVALSR----DKLLYGPPGLRMEFIPRQKNKG

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like2.3e-2541.86Show/hide
Query:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE
        GPW +D  LL+   I G ++ S +E    SFW+   DLP    +   AK LGN++G FE +D+ +  R  G  LRIR+ +++++PLKRG   ++  +G++
Subjt:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE

Query:  EWSAMKYEKLPDYCFACGRVGHMARDCDD
         W   KYE+LP++CFACGR+GH  RDC++
Subjt:  EWSAMKYEKLPDYCFACGRVGHMARDCDD

A0A392M033 CCHC-type domain-containing protein (Fragment)8.8e-2535.29Show/hide
Query:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE
        GPW +D  LL+   I G ++ S +   H SFW+   DLP    +   AK LGN VG FE +D  E+ R  G  LR+R+ +++++PLKRG   ++  +G+E
Subjt:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE

Query:  EWSAMKYEKLPDYCFACGRVGHMARDCDDKVALSRDKLLYGP---------PGLRMEFIPRQKNKGKNDMERKD--------NSNVK----RWAKKAEEE
         W   KYE+LP++CFACGR+GH  RDC+D      D++ Y           P LR   +P+   + K +    +         SN K      AK+ +EE
Subjt:  EWSAMKYEKLPDYCFACGRVGHMARDCDDKVALSRDKLLYGP---------PGLRMEFIPRQKNKGKNDMERKD--------NSNVK----RWAKKAEEE

Query:  IERK
        +E++
Subjt:  IERK

A0A392M948 Zinc CCHC-type-like protein (Fragment)2.3e-2541.86Show/hide
Query:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE
        GPW +D  LL+   I G ++ S +E    SFW+   DLP    +   AK LGN++G FE +D+ +  R  G  LRIR+ +++++PLKRG   ++  +G++
Subjt:  GPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEE

Query:  EWSAMKYEKLPDYCFACGRVGHMARDCDD
         W   KYE+LP++CFACGR+GH  RDC++
Subjt:  EWSAMKYEKLPDYCFACGRVGHMARDCDD

A0A5C7H9Y2 CCHC-type domain-containing protein6.1e-2632.81Show/hide
Query:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK
        +EGGPW++D  LLV +E  G ++ + ++F++  FWI   +LP  CLNR+    LG +VG+ + +D  E     G  +RIR+ I+V  PLKRG+ + +G  
Subjt:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK

Query:  GEEEWSAMKYEKLPDYCFACGRVGHMARDC--DDKVALSRDKLLYGPPGLRMEFIPRQKNKGKNDMERKDNSNVKRWAKKAEEEIERKISKK
         +     + YE+LP++C+ CG++GH+ RDC  + K   S     +GP    M  + R ++KG  + +     + +  +    E +  K S K
Subjt:  GEEEWSAMKYEKLPDYCFACGRVGHMARDC--DDKVALSRDKLLYGPPGLRMEFIPRQKNKGKNDMERKDNSNVKRWAKKAEEEIERKISKK

A0A6J1DU55 uncharacterized protein LOC1110231352.6e-2434.16Show/hide
Query:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK
        M+ GPW +D AL+V ++       S +EF   +FWIH  DLP   LN+  A  LGN +G F  VD +E     G SLRIR+ I++ +PL+RG+ I I   
Subjt:  MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSK

Query:  GEEEWSAMKYEKLPDYCFACGRVGHMARDCDDKVALSRDKLL----YGPPGLRMEFI----PRQKNKGKNDMERKDN--SNVKRWAKKAEEEIERKISKK
            W  ++YE+LPD+C+ CG +GH + DCD +   ++D       YGP    + F+      QK +      R+D+  S+     ++  EE ++++S++
Subjt:  GEEEWSAMKYEKLPDYCFACGRVGHMARDCDDKVALSRDKLL----YGPPGLRMEFI----PRQKNKGKNDMERKDN--SNVKRWAKKAEEEIERKISKK

Query:  AS
         +
Subjt:  AS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAGGGCCTTGGATATATGATGGAGCCCTACTCGTCTTTAAGGAAATAAAAGGAGGGGATAGATACTCTAGAATGGAGTTCAAGCATGCGTCTTTTTGGATCCA
TTTCTTAGATTTACCAAGGGTCTGTTTAAACAGAAAATGGGCGAAGGCATTGGGCAATGTAGTAGGGGAATTTGAACGCGTAGATGTGGATGAAATGGAAAGGAAGGGAG
GGGACTCATTAAGGATCCGAATTAAAATTAACGTGCAGCAACCTCTTAAGAGGGGAATGATGATCAGGATTGGGTCGAAAGGGGAGGAAGAATGGAGTGCAATGAAATAT
GAGAAACTACCGGACTATTGCTTTGCCTGTGGTAGGGTGGGGCACATGGCCAGAGACTGTGATGACAAAGTGGCCCTGAGCAGGGACAAGCTTCTATACGGACCTCCAGG
ACTTAGAATGGAGTTCATTCCAAGACAAAAGAACAAAGGTAAGAACGATATGGAGAGAAAGGATAATTCAAATGTGAAGAGATGGGCAAAAAAGGCAGAGGAAGAAATTG
AAAGGAAAATCTCTAAAAAAGCAAGCACTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAGGGCCTTGGATATATGATGGAGCCCTACTCGTCTTTAAGGAAATAAAAGGAGGGGATAGATACTCTAGAATGGAGTTCAAGCATGCGTCTTTTTGGATCCA
TTTCTTAGATTTACCAAGGGTCTGTTTAAACAGAAAATGGGCGAAGGCATTGGGCAATGTAGTAGGGGAATTTGAACGCGTAGATGTGGATGAAATGGAAAGGAAGGGAG
GGGACTCATTAAGGATCCGAATTAAAATTAACGTGCAGCAACCTCTTAAGAGGGGAATGATGATCAGGATTGGGTCGAAAGGGGAGGAAGAATGGAGTGCAATGAAATAT
GAGAAACTACCGGACTATTGCTTTGCCTGTGGTAGGGTGGGGCACATGGCCAGAGACTGTGATGACAAAGTGGCCCTGAGCAGGGACAAGCTTCTATACGGACCTCCAGG
ACTTAGAATGGAGTTCATTCCAAGACAAAAGAACAAAGGTAAGAACGATATGGAGAGAAAGGATAATTCAAATGTGAAGAGATGGGCAAAAAAGGCAGAGGAAGAAATTG
AAAGGAAAATCTCTAAAAAAGCAAGCACTTCATAG
Protein sequenceShow/hide protein sequence
MEGGPWIYDGALLVFKEIKGGDRYSRMEFKHASFWIHFLDLPRVCLNRKWAKALGNVVGEFERVDVDEMERKGGDSLRIRIKINVQQPLKRGMMIRIGSKGEEEWSAMKY
EKLPDYCFACGRVGHMARDCDDKVALSRDKLLYGPPGLRMEFIPRQKNKGKNDMERKDNSNVKRWAKKAEEEIERKISKKASTS