; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008076 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008076
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr9:11470490..11471420
RNA-Seq ExpressionLag0008076
SyntenyLag0008076
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.4e-2762.37Show/hide
Query:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGT
        MAR+ A+RG   EDP+ H++SFL+ICGTVK+NGVS DA +LRLF FSLQD+A+DWL++IPP  ITTW+ L  AF  K+FP AK+ +L  EIGT
Subjt:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGT

XP_020245024.1 uncharacterized protein LOC109823150 [Asparagus officinalis]7.4e-2455.79Show/hide
Query:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS
        M +   + G+PTEDPN H+  FL+ C T+K+NGVS+DA +LRLF FSL+DKAR WLQS+PP  ITTWD L  +F  K+FP +KT +L N+I T +
Subjt:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS

XP_020264650.1 uncharacterized protein LOC109840419 [Asparagus officinalis]3.3e-2459.55Show/hide
Query:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS
        + G+PTEDPN H+  FL+ C T+K+NGVS+DA +LRLF FSL+DKAR WLQS+PP  ITTWD L+ AF  K+FP +KT +L N+I T +
Subjt:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS

XP_020266504.1 uncharacterized protein LOC109841993 [Asparagus officinalis]7.4e-2459.55Show/hide
Query:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS
        + G+PTEDPN H+  FL+ C T+K+NGVS+DA +LRLF FSL+DKAR WLQS+PP  ITTWD L  AF  K+FP +KT +L N+I T +
Subjt:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS

XP_027123961.1 uncharacterized protein LOC113740608 [Coffea arabica]3.3e-2458.95Show/hide
Query:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS
        M +   Y G+ TEDPNSH+ +FL+IC T+K NGVSEDA +LRLF FSL+DKA+ WLQS PP   TTWD L  AF  KFFP  KT KL  +I + S
Subjt:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS

TrEMBL top hitse value%identityAlignment
A0A2I4G4Q3 uncharacterized protein LOC1090047128.9e-2355.43Show/hide
Query:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIG
        M +   + GSP +DPN H+  FL+IC TVK+NGV+ED  RLRLF FSL+D+AR WLQS+ P  IT+W  +   F  KFFP AKT +L +EIG
Subjt:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIG

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129457.5e-2257.65Show/hide
Query:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEI
        + G P++DPNSH+ +FL+IC T K NGV++DA RLRLF FSL+DKA+ WL S+P   ITTW+ L   F  KFFP AKT K+ N+I
Subjt:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEI

A0A6J0ZYV0 uncharacterized protein LOC1104134137.5e-2257.65Show/hide
Query:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEI
        + G P++DPNSH+ +FL+IC T K NGV++DA RLRLF FSL+DKA+ WL S+P   ITTW+ L   F  KFFP AKT K+ N+I
Subjt:  YRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEI

A0A6P6W382 uncharacterized protein LOC1137297698.9e-2355.79Show/hide
Query:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS
        M +   Y G+ TEDPNSH+ +FL+IC T+K NGVS+DA +LRLF FSL+DKA+ WLQS PP   TTW  L  AF  KFFP  KT +L  +I + S
Subjt:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS

A0A6P6XAQ1 Reverse transcriptase1.6e-2458.95Show/hide
Query:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS
        M +   Y G+ TEDPNSH+ +FL+IC T+K NGVSEDA +LRLF FSL+DKA+ WLQS PP   TTWD L  AF  KFFP  KT KL  +I + S
Subjt:  MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGACTGTGCCTACAGAGGATCACCCACGGAGGATCCAAATTCTCACATGAAATCCTTCCTAGACATCTGTGGGACAGTAAAGTTAAATGGAGTATCTGAAGA
TGCCACTCGCTTACGTTTATTTCATTTTTCTTTGCAGGATAAAGCAAGGGATTGGTTGCAATCAATTCCACCTGCCAGAATTACCACCTGGGATGCTTTGGTCCATGCAT
TCTTCAAGAAATTCTTTCCTCATGCTAAGACGGTAAAGCTATGGAACGAAATTGGGACGTTGTCGCACGTTGGTTCCTCTCACTCGTTGAAGCTCGCCGCCACCGTCTCA
CTCGTTGAAGCTCGTCGCCGCCATCTCAGGTGGTCACTGAAGCTCCAGTCGCTGAGGTTGCCTAAGTCGTCGTTGAAGCTCAGGACGCCTACGTCGCCGCCGAAATTGAA
ATCGCTAAGGTCGCTGCCCCTTTCCACTCTCTTCTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGACTGTGCCTACAGAGGATCACCCACGGAGGATCCAAATTCTCACATGAAATCCTTCCTAGACATCTGTGGGACAGTAAAGTTAAATGGAGTATCTGAAGA
TGCCACTCGCTTACGTTTATTTCATTTTTCTTTGCAGGATAAAGCAAGGGATTGGTTGCAATCAATTCCACCTGCCAGAATTACCACCTGGGATGCTTTGGTCCATGCAT
TCTTCAAGAAATTCTTTCCTCATGCTAAGACGGTAAAGCTATGGAACGAAATTGGGACGTTGTCGCACGTTGGTTCCTCTCACTCGTTGAAGCTCGCCGCCACCGTCTCA
CTCGTTGAAGCTCGTCGCCGCCATCTCAGGTGGTCACTGAAGCTCCAGTCGCTGAGGTTGCCTAAGTCGTCGTTGAAGCTCAGGACGCCTACGTCGCCGCCGAAATTGAA
ATCGCTAAGGTCGCTGCCCCTTTCCACTCTCTTCTATTAA
Protein sequenceShow/hide protein sequence
MARDCAYRGSPTEDPNSHMKSFLDICGTVKLNGVSEDATRLRLFHFSLQDKARDWLQSIPPARITTWDALVHAFFKKFFPHAKTVKLWNEIGTLSHVGSSHSLKLAATVS
LVEARRRHLRWSLKLQSLRLPKSSLKLRTPTSPPKLKSLRSLPLSTLFY