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Lag0008081 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008081
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionKeratin, type II cytoskeletal 1-like
Genome locationchr9:11568719..11569144
RNA-Seq ExpressionLag0008081
SyntenyLag0008081
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.0e-0834.58Show/hide
Query:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W
        SS   +    G+K +  KL+++ +L+WKFQ+L  L  + L+ F++ + E PSK+LI T +  S+S+  T N  Y+ W RQD LI+   L     ++    
Subjt:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W

Query:  LNCSIAR
        L+C  A+
Subjt:  LNCSIAR

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.3e-0834.58Show/hide
Query:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W
        SS   +     +K +  KL ++N+L+WKFQ+L  L  + L+ F++ + E PSK+LI T +  S+S+ +T N  Y+ W RQD LI+   L     ++    
Subjt:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W

Query:  LNCSIAR
        L+C  A+
Subjt:  LNCSIAR

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.3e-0834.58Show/hide
Query:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W
        SS   +     +K +  KL ++N+L+WKFQ+L  L  + L+ F++ + E PSK+LI T +  S+S+ +T N  Y+ W RQD LI+   L     ++    
Subjt:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W

Query:  LNCSIAR
        L+C  A+
Subjt:  LNCSIAR

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]6.4e-1137.19Show/hide
Query:  MESSASQRTASEIDSSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIAL
        M S +S R +      Q+ K INPGSK +  +L+++N L+WKFQ+   L+G+ L+ +ID + + P++F + T+ DESSSS    N  Y  W++QD LI+ 
Subjt:  MESSASQRTASEIDSSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIAL

Query:  GFLDRFQHQL---WLNCSIAR
          L      +    L+C  AR
Subjt:  GFLDRFQHQL---WLNCSIAR

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]5.2e-1342.24Show/hide
Query:  TASEIDS---SQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDR
        ++SE DS   +Q+   +NPG+K +T KL++EN+L+W+ Q+   L+GH L KFIDP+ ++PS+F  + SADE SSSV + N E+  W RQD LI    L  
Subjt:  TASEIDS---SQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDR

Query:  FQHQL---WLNCSIAR
           ++    L C  A+
Subjt:  FQHQL---WLNCSIAR

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-0834.58Show/hide
Query:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W
        SS   +    G+K +  KL+++ +L+WKFQ+L  L  + L+ F++ + E PSK+LI T +  S+S+  T N  Y+ W RQD LI+   L     ++    
Subjt:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W

Query:  LNCSIAR
        L+C  A+
Subjt:  LNCSIAR

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like6.5e-0934.58Show/hide
Query:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W
        SS   +     +K +  KL ++N+L+WKFQ+L  L  + L+ F++ + E PSK+LI T +  S+S+ +T N  Y+ W RQD LI+   L     ++    
Subjt:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W

Query:  LNCSIAR
        L+C  A+
Subjt:  LNCSIAR

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like6.5e-0934.58Show/hide
Query:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W
        SS   +     +K +  KL ++N+L+WKFQ+L  L  + L+ F++ + E PSK+LI T +  S+S+ +T N  Y+ W RQD LI+   L     ++    
Subjt:  SSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL---W

Query:  LNCSIAR
        L+C  A+
Subjt:  LNCSIAR

A0A6J1DLT9 uncharacterized protein LOC1110217573.1e-1137.19Show/hide
Query:  MESSASQRTASEIDSSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIAL
        M S +S R +      Q+ K INPGSK +  +L+++N L+WKFQ+   L+G+ L+ +ID + + P++F + T+ DESSSS    N  Y  W++QD LI+ 
Subjt:  MESSASQRTASEIDSSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIAL

Query:  GFLDRFQHQL---WLNCSIAR
          L      +    L+C  AR
Subjt:  GFLDRFQHQL---WLNCSIAR

A0A6J1E314 uncharacterized protein LOC1110255722.5e-1342.24Show/hide
Query:  TASEIDS---SQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDR
        ++SE DS   +Q+   +NPG+K +T KL++EN+L+W+ Q+   L+GH L KFIDP+ ++PS+F  + SADE SSSV + N E+  W RQD LI    L  
Subjt:  TASEIDS---SQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDR

Query:  FQHQL---WLNCSIAR
           ++    L C  A+
Subjt:  FQHQL---WLNCSIAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTTCCGCTTCTCAACGCACTGCATCTGAAATCGATTCATCTCAATCACAGAAGTTCATCAACCCTGGAAGTAAAACAACAACGCCGAAATTAGATGAAGAAAA
TTACCTGATGTGGAAGTTTCAGGTTCTGATCACTCTTCGAGGCCACAGGCTGCAGAAATTCATCGACCCCGACTATGAAGTTCCTTCTAAGTTCTTGATTTTGACATCTG
CTGATGAATCGTCTTCCTCTGTTAAAACGCTCAATTTGGAATATGAATACTGGGTTCGACAAGACAACTTGATCGCTCTTGGTTTCTTGGATCGATTTCAACACCAATTG
TGGCTGAATTGCTCGATTGCAAGACTTCACGGGAGGTTTGGCTTCATCTCTCTACCAGATTCTCTTCGAAACATGTTGCTAGAGTTCTGGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTTCCGCTTCTCAACGCACTGCATCTGAAATCGATTCATCTCAATCACAGAAGTTCATCAACCCTGGAAGTAAAACAACAACGCCGAAATTAGATGAAGAAAA
TTACCTGATGTGGAAGTTTCAGGTTCTGATCACTCTTCGAGGCCACAGGCTGCAGAAATTCATCGACCCCGACTATGAAGTTCCTTCTAAGTTCTTGATTTTGACATCTG
CTGATGAATCGTCTTCCTCTGTTAAAACGCTCAATTTGGAATATGAATACTGGGTTCGACAAGACAACTTGATCGCTCTTGGTTTCTTGGATCGATTTCAACACCAATTG
TGGCTGAATTGCTCGATTGCAAGACTTCACGGGAGGTTTGGCTTCATCTCTCTACCAGATTCTCTTCGAAACATGTTGCTAGAGTTCTGGATTTAA
Protein sequenceShow/hide protein sequence
MESSASQRTASEIDSSQSQKFINPGSKTTTPKLDEENYLMWKFQVLITLRGHRLQKFIDPDYEVPSKFLILTSADESSSSVKTLNLEYEYWVRQDNLIALGFLDRFQHQL
WLNCSIARLHGRFGFISLPDSLRNMLLEFWI