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Lag0008086 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008086
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome locationchr9:11686147..11686650
RNA-Seq ExpressionLag0008086
SyntenyLag0008086
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7055450.1 unnamed protein product [Microthlaspi erraticum]6.4e-3443.95Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKE+L+KS+   +  ++M+ F+LP  +   +    ++FW     +K K HW+SW+RMC  K  GG+ FR    FNQA+L KQ+W +++ PES+L K LK 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREG
        RYF   +FLE  IGS PS  WRSI WGR+  +K    R+GN   +++  DPWI  EG
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREG

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]1.2e-4048.73Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKEVLIK++AQ I  +SM+ FR P  +  +I+ + + FW G +  + K HW SWKR+C +KE GG+ F+    FNQAML KQSW +I+NP S+L + L+ 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN
        +YFK  NF+   +GS+PS  WRSI WG++ F+K   WRIGN   + +  DPWI REG+
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]1.7e-4250.63Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKEVLIK++AQ I  ++++ F+LP  I  ++ +I + FW G SSE  K HW SWK +C  K+ GG+ FR  S FNQAML KQSW ++R+P+S+L KTL+ 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN
        +YFK  +FL+  +G+ PS  WRSI WGRD F K Y W++GN   I +  DPW+ R+GN
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN

XP_030495270.1 uncharacterized protein LOC115711072 [Cannabis sativa]1.7e-3444.65Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCD-IDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLK
        GKEVL K++ Q I T++M+ F+L    FCD ++ + SNFW G +    K HW  WK +CK+K  GG+ FR    FNQA+L KQ+W +   P+++L + LK
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCD-IDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLK

Query:  DRYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN
         RYF + +FLE  IG SPS TW+SICWG++  +K   ++IG+ + +   KDPWI    N
Subjt:  DRYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN

XP_030502375.1 uncharacterized protein LOC115717530 [Cannabis sativa]6.8e-3645.75Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKEVL+K++ Q I T++M+ FRLP Y    ++ +  NFW G +   +K HW SW  +CK+K  GG+ FR    FNQA+L KQ+W +  NP+S+L + LK 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWI
        RYF +  FLE  +G SPS TW+ I W R+  +K   W++G+   IQ D DPWI
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWI

TrEMBL top hitse value%identityAlignment
A0A6J1CV63 uncharacterized protein LOC1110146625.8e-4148.73Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKEVLIK++AQ I  +SM+ FR P  +  +I+ + + FW G +  + K HW SWKR+C +KE GG+ F+    FNQAML KQSW +I+NP S+L + L+ 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN
        +YFK  NF+   +GS+PS  WRSI WG++ F+K   WRIGN   + +  DPWI REG+
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN

A0A6J1DRA0 uncharacterized protein LOC1110224238.1e-4350.63Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKEVLIK++AQ I  ++++ F+LP  I  ++ +I + FW G SSE  K HW SWK +C  K+ GG+ FR  S FNQAML KQSW ++R+P+S+L KTL+ 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN
        +YFK  +FL+  +G+ PS  WRSI WGRD F K Y W++GN   I +  DPW+ R+GN
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN

A0A803P4U9 Uncharacterized protein5.1e-3745.16Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKE+LIK++ Q +  + M+ FR+   I  DI+ + + FW GE+++K K HW SW++MCK KENGG+ FR    FNQA+L KQ W ++ NP+ +L + LK 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKR
         YF + NF+E  +G   S  WR I WGR+  +K Y W IGN   +++++DPWI R
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKR

A0A803P8L6 Uncharacterized protein7.8e-3845.81Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKE+LIK++ Q +  ++M+ FR+   I  +I+ + ++FW G SS+K K HW SW++MCK KE GG+ FR+   FNQA+L KQ W ++ NP+ ++ K LK 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKR
         YF + NFLE  +G   S  WR I WGR+  +K Y W IGN L I++++DPW+ R
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKR

A0A803PQ30 Uncharacterized protein3.3e-3645.75Show/hide
Query:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD
        GKEVL+K++ Q I T++M+ FRLP Y    ++ +  NFW G +   +K HW SW  +CK+K  GG+ FR    FNQA+L KQ+W +  NP+S+L + LK 
Subjt:  GKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKD

Query:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWI
        RYF +  FLE  +G SPS TW+ I W R+  +K   W++G+   IQ D DPWI
Subjt:  RYFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWI

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.0e-1530.63Show/hide
Query:  FRGKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTL
        F G+  L K++   +   SM+   LP  I   +D++   F  G ++EK K H + W ++C  K+ GG+  R     N+A+++K  W L++   S+    L
Subjt:  FRGKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTL

Query:  KDRY----FKDENFLEGPIGSSPSTTWRSICWG-RDRFMKDYIWRIGNDLRIQMDKDPWI
        + +Y     +D  +L  P GS  S+TWRSI  G RD       W  G+  +I+   D W+
Subjt:  KDRY----FKDENFLEGPIGSSPSTTWRSICWG-RDRFMKDYIWRIGNDLRIQMDKDPWI

P93295 Uncharacterized mitochondrial protein AtMg003101.5e-2234.51Show/hide
Query:  FSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKE-NGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKDRYFKDENFLEGPIG
        ++M+ FRL   +   +    + FW      K K  W++W+++CK+KE +GG+ FR    FNQA+L KQS+ +I  P ++L + L+ RYF   + +E  +G
Subjt:  FSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKE-NGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKDRYFKDENFLEGPIG

Query:  SSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKRE
        + PS  WRSI  GR+   +  +  IG+ +  ++  D WI  E
Subjt:  SSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKRE

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.6e-1932.37Show/hide
Query:  TFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKDRYFKDENFLEGPIG
        T++M  F LP  +   I  + ++FW     E    HW +W  +   K  GGI F+    FN A+L KQ W ++  PES++ K  K RYF   + L  P+G
Subjt:  TFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKDRYFKDENFLEGPIG

Query:  SSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWI
        S PS  W+SI   ++   +     +GN   I + +  W+
Subjt:  SSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWI

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-2334.51Show/hide
Query:  FSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKE-NGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKDRYFKDENFLEGPIG
        ++M+ FRL   +   +    + FW      K K  W++W+++CK+KE +GG+ FR    FNQA+L KQS+ +I  P ++L + L+ RYF   + +E  +G
Subjt:  FSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKE-NGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKDRYFKDENFLEGPIG

Query:  SSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKRE
        + PS  WRSI  GR+   +  +  IG+ +  ++  D WI  E
Subjt:  SSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATAGAAGTTGTTCTCTTTAGGGGAAAAGAAGTGCTCATCAAATCGATGGCTCAAGTTATTCTCACCTTTTCTATGAACTGGTTTCGACTTCCTAACTATATTTT
TTGTGACATTGACAGGATATGCTCCAATTTCTGGTCGGGAGAGTCAAGCGAGAAAGCCAAGCATCATTGGATGAGTTGGAAGAGGATGTGCAAAAACAAGGAAAATGGAG
GAATAGACTTTAGACAGACCTCCCCCTTTAATCAAGCCATGCTCACGAAACAAAGTTGGGGGCTCATTAGAAATCCTGAAAGCATCCTCTTTAAGACGTTAAAGGACAGA
TACTTCAAGGATGAGAATTTCTTGGAGGGTCCTATAGGATCCTCCCCTTCGACTACTTGGAGAAGTATTTGTTGGGGTCGTGATCGTTTTATGAAGGATTACATATGGCG
TATAGGCAACGACTTAAGAATCCAAATGGACAAAGACCCATGGATCAAGAGAGAGGGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATAGAAGTTGTTCTCTTTAGGGGAAAAGAAGTGCTCATCAAATCGATGGCTCAAGTTATTCTCACCTTTTCTATGAACTGGTTTCGACTTCCTAACTATATTTT
TTGTGACATTGACAGGATATGCTCCAATTTCTGGTCGGGAGAGTCAAGCGAGAAAGCCAAGCATCATTGGATGAGTTGGAAGAGGATGTGCAAAAACAAGGAAAATGGAG
GAATAGACTTTAGACAGACCTCCCCCTTTAATCAAGCCATGCTCACGAAACAAAGTTGGGGGCTCATTAGAAATCCTGAAAGCATCCTCTTTAAGACGTTAAAGGACAGA
TACTTCAAGGATGAGAATTTCTTGGAGGGTCCTATAGGATCCTCCCCTTCGACTACTTGGAGAAGTATTTGTTGGGGTCGTGATCGTTTTATGAAGGATTACATATGGCG
TATAGGCAACGACTTAAGAATCCAAATGGACAAAGACCCATGGATCAAGAGAGAGGGGAATTGA
Protein sequenceShow/hide protein sequence
MEIEVVLFRGKEVLIKSMAQVILTFSMNWFRLPNYIFCDIDRICSNFWSGESSEKAKHHWMSWKRMCKNKENGGIDFRQTSPFNQAMLTKQSWGLIRNPESILFKTLKDR
YFKDENFLEGPIGSSPSTTWRSICWGRDRFMKDYIWRIGNDLRIQMDKDPWIKREGN