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Lag0008090 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008090
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr9:11819790..11820161
RNA-Seq ExpressionLag0008090
SyntenyLag0008090
Gene Ontology termsGO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.9e-1538.14Show/hide
Query:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS
        M S+S+      T   S I++    G+K + VKL+++ FL WK Q+   L  + L  F++ ++E P K++ S +  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS

Query:  WFLGSMTNEVLSEVLDCE
        W LGSM+ E+L+++L C+
Subjt:  WFLGSMTNEVLSEVLDCE

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.1e-1438.14Show/hide
Query:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS
        M S+S+      T   S I++     +K + VKL ++NFL WK Q+   L  + L  F++ ++E P K++ S    S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS

Query:  WFLGSMTNEVLSEVLDCE
        W LGSM+ E+L+++L C+
Subjt:  WFLGSMTNEVLSEVLDCE

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.9e-1538.14Show/hide
Query:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS
        M S+S+      T   S I++    G+K + VKL+++ FL WK Q+   L  + L  F++ ++E P K++ S +  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS

Query:  WFLGSMTNEVLSEVLDCE
        W LGSM+ E+L+++L C+
Subjt:  WFLGSMTNEVLSEVLDCE

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]4.3e-1944.55Show/hide
Query:  QISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITSWFLGSMTNEVLSEVLDC
        Q SK INPGSK + V+L+++N L WK Q++  L+G+GL  +ID + + P +F+++ ++ S S     NP Y  WI+QD LI++W LGSM  ++LS++LDC
Subjt:  QISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITSWFLGSMTNEVLSEVLDC

Query:  E
        +
Subjt:  E

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]8.9e-2553.21Show/hide
Query:  SSET--LTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSR-SVPNPDYEAWIRQDNLITSWFLGSMTNE
        SSET     +Q S  +NPG+K +T+KL++ENFL W++Q+   L+GHGLG+FID +A+IP +F++S DE S    PNP++  W RQD LITSW LGSM+ E
Subjt:  SSET--LTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSR-SVPNPDYEAWIRQDNLITSWFLGSMTNE

Query:  VLSEVLDCE
        +LS++L+CE
Subjt:  VLSEVLDCE

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-1538.14Show/hide
Query:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS
        M S+S+      T   S I++    G+K + VKL+++ FL WK Q+   L  + L  F++ ++E P K++ S +  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS

Query:  WFLGSMTNEVLSEVLDCE
        W LGSM+ E+L+++L C+
Subjt:  WFLGSMTNEVLSEVLDCE

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-1538.14Show/hide
Query:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS
        M S+S+      T   S I++    G+K + VKL+++ FL WK Q+   L  + L  F++ ++E P K++ S +  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS

Query:  WFLGSMTNEVLSEVLDCE
        W LGSM+ E+L+++L C+
Subjt:  WFLGSMTNEVLSEVLDCE

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like5.3e-1538.14Show/hide
Query:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS
        M S+S+      T   S I++     +K + VKL ++NFL WK Q+   L  + L  F++ ++E P K++ S    S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITS

Query:  WFLGSMTNEVLSEVLDCE
        W LGSM+ E+L+++L C+
Subjt:  WFLGSMTNEVLSEVLDCE

A0A6J1DLT9 uncharacterized protein LOC1110217572.1e-1944.55Show/hide
Query:  QISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITSWFLGSMTNEVLSEVLDC
        Q SK INPGSK + V+L+++N L WK Q++  L+G+GL  +ID + + P +F+++ ++ S S     NP Y  WI+QD LI++W LGSM  ++LS++LDC
Subjt:  QISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRS---VPNPDYEAWIRQDNLITSWFLGSMTNEVLSEVLDC

Query:  E
        +
Subjt:  E

A0A6J1E314 uncharacterized protein LOC1110255724.3e-2553.21Show/hide
Query:  SSET--LTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSR-SVPNPDYEAWIRQDNLITSWFLGSMTNE
        SSET     +Q S  +NPG+K +T+KL++ENFL W++Q+   L+GHGLG+FID +A+IP +F++S DE S    PNP++  W RQD LITSW LGSM+ E
Subjt:  SSET--LTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSR-SVPNPDYEAWIRQDNLITSWFLGSMTNE

Query:  VLSEVLDCE
        +LS++L+CE
Subjt:  VLSEVLDCE

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.0e-0839.24Show/hide
Query:  TNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRSVPNPDYEAWIRQDNLITSWFLGSMTNEV
        +N  KL   N+L W  QV A+  G+ L  F+D    +PP  I +   P     NPDY  W RQD LI S  LG+++  V
Subjt:  TNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRSVPNPDYEAWIRQDNLITSWFLGSMTNEV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.0e-0839.24Show/hide
Query:  TNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRSVPNPDYEAWIRQDNLITSWFLGSMTNEV
        +N  KL   N+L W  QV A+  G+ L  F+D    +PP  I +   P     NPDY  W RQD LI S  LG+++  V
Subjt:  TNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRSVPNPDYEAWIRQDNLITSWFLGSMTNEV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCTCATCTGCTGCAAATATCTCTTCTGAAACCCTCACTCCCTCTCAAATTTCTAAGCCGATTAACCCTGGTAGCAAGACCAACACCGTCAAATTGGACGAAGA
AAACTTTCTTTATTGGAAAATCCAAGTTCAAGCTGTTCTTCGAGGACACGGATTAGGGCGATTTATTGATGAAGATGCTGAAATTCCCCCAAAATTCATTAAGAGCATTG
ATGAACCATCAAGATCAGTTCCGAATCCTGATTATGAAGCATGGATTCGTCAAGATAATCTAATCACTTCTTGGTTTCTTGGCTCAATGACAAACGAGGTTCTTTCTGAA
GTACTTGACTGTGAACCTCTCGTGAGATCTGGAAGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCTCATCTGCTGCAAATATCTCTTCTGAAACCCTCACTCCCTCTCAAATTTCTAAGCCGATTAACCCTGGTAGCAAGACCAACACCGTCAAATTGGACGAAGA
AAACTTTCTTTATTGGAAAATCCAAGTTCAAGCTGTTCTTCGAGGACACGGATTAGGGCGATTTATTGATGAAGATGCTGAAATTCCCCCAAAATTCATTAAGAGCATTG
ATGAACCATCAAGATCAGTTCCGAATCCTGATTATGAAGCATGGATTCGTCAAGATAATCTAATCACTTCTTGGTTTCTTGGCTCAATGACAAACGAGGTTCTTTCTGAA
GTACTTGACTGTGAACCTCTCGTGAGATCTGGAAGATCTTGA
Protein sequenceShow/hide protein sequence
MDSSSAANISSETLTPSQISKPINPGSKTNTVKLDEENFLYWKIQVQAVLRGHGLGRFIDEDAEIPPKFIKSIDEPSRSVPNPDYEAWIRQDNLITSWFLGSMTNEVLSE
VLDCEPLVRSGRS