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Lag0008101 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008101
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr9:12226270..12227034
RNA-Seq ExpressionLag0008101
SyntenyLag0008101
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]7.6e-2840.41Show/hide
Query:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLKAR--------------------------------VKDLLY
        Q   P     +  ++QFI DF+ YGPP  N  SEK+T  E+WI ELEA++ YL C D LK +                                 KDLLY
Subjt:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLKAR--------------------------------VKDLLY

Query:  DYYFPDIVKDDKEIEFLHLTQ--------------------GMISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ
        DYYFP  +KD+KEIEFLHLTQ                     +I T  RKIKRF+RGL + I+G + L+ PT +A  +KGAL+MDK+V +K Q
Subjt:  DYYFPDIVKDDKEIEFLHLTQ--------------------GMISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ

XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]3.0e-2440.33Show/hide
Query:  DSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYDYYFPDIVKDDKE
        ++ FI DFK YGPP  +  SE++TAAE+WI ELEA + YL CED  K                                AR KDLLYDYY+ + VKD KE
Subjt:  DSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYDYYFPDIVKDDKE

Query:  IEFLHLTQGMISTPE--------------------RKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQS
         EFLHL QG +S  +                     KIKRF++GL + I+G + L+ P  +A  ++GALIMDK+VS K  S
Subjt:  IEFLHLTQGMISTPE--------------------RKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQS

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]2.1e-2540Show/hide
Query:  PKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYD
        P   HL  T   +++FI DFK YGPP  +  SE++TA E+WI ELEA++ YL CED  K                                AR K+LLYD
Subjt:  PKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYD

Query:  YYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKK
        YY+P+ VKD KE EFLHL QG                    +I T   KIKRF++GL++ I+G + L+ PT +A  ++GAL+MDK+VS K
Subjt:  YYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKK

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]1.8e-2438.17Show/hide
Query:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY
        Q + P       D+ QFI DFKC+GPP  N  SE+ TAAE+W+ ELEA++ YL C D  K                                AR KDLLY
Subjt:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY

Query:  DYYFPDIVKDDKEIEFLHLTQGMIS--------------------TPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDK
        +YYFP I +++K +EFL LTQG ++                    T + KI +FI GL+ EI+G + LKEPT +A  ++ AL+MDK
Subjt:  DYYFPDIVKDDKEIEFLHLTQGMIS--------------------TPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDK

XP_022156546.1 uncharacterized protein LOC111023424 [Momordica charantia]3.0e-2437.31Show/hide
Query:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY
        Q + P    T   ++QFI DFK YGPP     SE++T AE+W+ ELEA++ YL CED  K                                AR K+LLY
Subjt:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY

Query:  DYYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ
        D+Y+ + V+D KE+EFLHL QG                    +I T   KIKRF++GL + I+GS+ L+ P  +A  ++G LIMDK+VS ++Q
Subjt:  DYYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ

TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196033.7e-2840.41Show/hide
Query:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLKAR--------------------------------VKDLLY
        Q   P     +  ++QFI DF+ YGPP  N  SEK+T  E+WI ELEA++ YL C D LK +                                 KDLLY
Subjt:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLKAR--------------------------------VKDLLY

Query:  DYYFPDIVKDDKEIEFLHLTQ--------------------GMISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ
        DYYFP  +KD+KEIEFLHLTQ                     +I T  RKIKRF+RGL + I+G + L+ PT +A  +KGAL+MDK+V +K Q
Subjt:  DYYFPDIVKDDKEIEFLHLTQ--------------------GMISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ

A0A6J1DL73 uncharacterized protein LOC1110221441.4e-2440.33Show/hide
Query:  DSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYDYYFPDIVKDDKE
        ++ FI DFK YGPP  +  SE++TAAE+WI ELEA + YL CED  K                                AR KDLLYDYY+ + VKD KE
Subjt:  DSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYDYYFPDIVKDDKE

Query:  IEFLHLTQGMISTPE--------------------RKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQS
         EFLHL QG +S  +                     KIKRF++GL + I+G + L+ P  +A  ++GALIMDK+VS K  S
Subjt:  IEFLHLTQGMISTPE--------------------RKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQS

A0A6J1DQB9 Reverse transcriptase8.5e-2538.17Show/hide
Query:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY
        Q + P       D+ QFI DFKC+GPP  N  SE+ TAAE+W+ ELEA++ YL C D  K                                AR KDLLY
Subjt:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY

Query:  DYYFPDIVKDDKEIEFLHLTQGMIS--------------------TPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDK
        +YYFP I +++K +EFL LTQG ++                    T + KI +FI GL+ EI+G + LKEPT +A  ++ AL+MDK
Subjt:  DYYFPDIVKDDKEIEFLHLTQGMIS--------------------TPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDK

A0A6J1DUM2 uncharacterized protein LOC1110232471.0e-2540Show/hide
Query:  PKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYD
        P   HL  T   +++FI DFK YGPP  +  SE++TA E+WI ELEA++ YL CED  K                                AR K+LLYD
Subjt:  PKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLYD

Query:  YYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKK
        YY+P+ VKD KE EFLHL QG                    +I T   KIKRF++GL++ I+G + L+ PT +A  ++GAL+MDK+VS K
Subjt:  YYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKK

A0A6J1DVA0 uncharacterized protein LOC1110234241.4e-2437.31Show/hide
Query:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY
        Q + P    T   ++QFI DFK YGPP     SE++T AE+W+ ELEA++ YL CED  K                                AR K+LLY
Subjt:  QPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLK--------------------------------ARVKDLLY

Query:  DYYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ
        D+Y+ + V+D KE+EFLHL QG                    +I T   KIKRF++GL + I+GS+ L+ P  +A  ++G LIMDK+VS ++Q
Subjt:  DYYFPDIVKDDKEIEFLHLTQG--------------------MISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGCCGCGATTGTAGACCTAGTGCTCGAGTAGGTAGAGAAGAAGTTCAAGGTGATGAAGCTAATGCTCAGCAGGGAGAAAACCCTCATGTCCCTCTTGTCATTCC
TCAGATGAGGAACGAAAGGCAACCAAAAAACCCACATCTTGGCCCTACTGTACCAGATGACTCCCAATTCATAGGGGACTTTAAGTGTTATGGACCTCCCCCTTCCAACG
ACTGCTCCGAGAAATCCACCGCTGCAGAGAAGTGGATTGCAGAGCTTGAAGCCATGTTCAACTACCTAGATTGTGAAGATCATCTGAAAGCAAGGGTTAAGGACCTCTTA
TATGACTATTATTTCCCAGATATCGTGAAGGATGATAAAGAGATAGAATTTCTACACTTGACTCAAGGCATGATAAGCACCCCCGAGCGAAAGATTAAAAGATTTATTAG
AGGTTTGCAAGAGGAAATTCAAGGTTCGATGGCCTTGAAGGAACCTACCATTTTTGCTCCAGTGCTCAAGGGCGCTTTGATCATGGATAAGAACGTCTCTAAAAAGATTC
AATCACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGCCGCGATTGTAGACCTAGTGCTCGAGTAGGTAGAGAAGAAGTTCAAGGTGATGAAGCTAATGCTCAGCAGGGAGAAAACCCTCATGTCCCTCTTGTCATTCC
TCAGATGAGGAACGAAAGGCAACCAAAAAACCCACATCTTGGCCCTACTGTACCAGATGACTCCCAATTCATAGGGGACTTTAAGTGTTATGGACCTCCCCCTTCCAACG
ACTGCTCCGAGAAATCCACCGCTGCAGAGAAGTGGATTGCAGAGCTTGAAGCCATGTTCAACTACCTAGATTGTGAAGATCATCTGAAAGCAAGGGTTAAGGACCTCTTA
TATGACTATTATTTCCCAGATATCGTGAAGGATGATAAAGAGATAGAATTTCTACACTTGACTCAAGGCATGATAAGCACCCCCGAGCGAAAGATTAAAAGATTTATTAG
AGGTTTGCAAGAGGAAATTCAAGGTTCGATGGCCTTGAAGGAACCTACCATTTTTGCTCCAGTGCTCAAGGGCGCTTTGATCATGGATAAGAACGTCTCTAAAAAGATTC
AATCACACTAG
Protein sequenceShow/hide protein sequence
MPRRDCRPSARVGREEVQGDEANAQQGENPHVPLVIPQMRNERQPKNPHLGPTVPDDSQFIGDFKCYGPPPSNDCSEKSTAAEKWIAELEAMFNYLDCEDHLKARVKDLL
YDYYFPDIVKDDKEIEFLHLTQGMISTPERKIKRFIRGLQEEIQGSMALKEPTIFAPVLKGALIMDKNVSKKIQSH