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Lag0008117 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008117
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr9:12580463..12581065
RNA-Seq ExpressionLag0008117
SyntenyLag0008117
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]1.1e-1943.97Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLRG A  WW+ +  +E+     I W+ FK L+ D++         EAEF+ LVQG +SV QY R+F ELS   LEL+     +I RFV GL   IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RPA++A  +  A ++D D + +A    EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]1.3e-2044.68Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLR  A  WW+ V  +E+    P++W+ FK L+ D++         EAEF+ L QG ++V QY R+F ELS    EL+ TE  +I RFV GLR  IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RPAT+A  +  A ++D D + R +   EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]3.0e-2247.52Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLRG A  WW+ V  +E+    PI W+ FK L+ D++         EAEF+ LVQG +SV QY R+F ELS   LEL+ TE  +I RFV GLR  IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RP T+A  +  A ++D D + +A    EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

XP_022156546.1 uncharacterized protein LOC111023424 [Momordica charantia]4.8e-2043.26Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLR  A  WW+ V  +E+    P+ W+ FK L+ DH+         E EF+ LVQG ++V QY R+F ELS   LEL+ TE  +I RFV GL   IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RP T+A  +    ++D D + R +   EVG+S G KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]4.8e-2043.97Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLRG A  WW+ V  +E+    PI+W+ FK L+ D++  +      EAEF+    G ++V QY R+F ELS    EL+ TE  +I RFV GLR  IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGDTPRAEQS-QEVGTSSGAKRK
         L RPAT+A  +    ++D D   + Q   EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGDTPRAEQS-QEVGTSSGAKRK

TrEMBL top hitse value%identityAlignment
A0A6J1DL73 uncharacterized protein LOC1110221445.2e-2043.97Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLRG A  WW+ +  +E+     I W+ FK L+ D++         EAEF+ LVQG +SV QY R+F ELS   LEL+     +I RFV GL   IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RPA++A  +  A ++D D + +A    EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

A0A6J1DQJ4 uncharacterized protein LOC1110228856.1e-2144.68Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLR  A  WW+ V  +E+    P++W+ FK L+ D++         EAEF+ L QG ++V QY R+F ELS    EL+ TE  +I RFV GLR  IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RPAT+A  +  A ++D D + R +   EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

A0A6J1DUM2 uncharacterized protein LOC1110232471.5e-2247.52Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLRG A  WW+ V  +E+    PI W+ FK L+ D++         EAEF+ LVQG +SV QY R+F ELS   LEL+ TE  +I RFV GLR  IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RP T+A  +  A ++D D + +A    EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

A0A6J1DVA0 uncharacterized protein LOC1110234242.3e-2043.26Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLR  A  WW+ V  +E+    P+ W+ FK L+ DH+         E EF+ LVQG ++V QY R+F ELS   LEL+ TE  +I RFV GL   IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK
         L RP T+A  +    ++D D + R +   EVG+S G KRK
Subjt:  SLGRPATFAATLASARMLDGD-TPRAEQSQEVGTSSGAKRK

A0A6J1DYU5 uncharacterized protein LOC1110255172.3e-2043.97Show/hide
Query:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV
        MLRG A  WW+ V  +E+    PI+W+ FK L+ D++  +      EAEF+    G ++V QY R+F ELS    EL+ TE  +I RFV GLR  IRG V
Subjt:  MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLV

Query:  SLGRPATFAATLASARMLDGDTPRAEQS-QEVGTSSGAKRK
         L RPAT+A  +    ++D D   + Q   EVG+SSG KRK
Subjt:  SLGRPATFAATLASARMLDGDTPRAEQS-QEVGTSSGAKRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGAGGCTATGCTCGCACTTGGTGGAACGTAGTGGGTCAATCCGAGAATCGCCCAGAGAATCCCATTTCATGGTCAGGGTTTAAAGGTCTTGTGCGAGACCATTT
TGGTTGTCGTTTTGCTGCTGTTGAGCTAGAAGCGGAGTTTGTCTCACTTGTTCAAGGGATCATGTCCGTAGAGCAGTACGTTAGGAGGTTCGAAGAGTTGTCCTACCGTG
TCCTGGAGTTGGTTGCCACCGAAGAAAGTAGGATCAACCGGTTCGTCAATGGCCTCCGTGCAGAGATCCGAGGATTGGTCAGCCTTGGTCGACCAGCCACGTTCGCAGCA
ACTCTTGCGAGTGCTCGGATGCTAGATGGTGACACCCCTAGGGCGGAGCAGTCCCAGGAAGTGGGCACGTCGTCTGGTGCCAAGAGGAAGCAGGAAGAGGAAGTGCCTGC
AGCTGGACAGAAAGTCAGAAGCTCTGTGCCAGGGACCAGTGAATGCTTAATGGAGAAAGTCCAGCAAGAGGAGTTCTTGCCCCGGGTCACCGATGAAGAGCTCAAGGCAG
AGTATCCTGAGCTTTATGACGATGACGAGTCTGATGATGAAGATAGCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGAGGCTATGCTCGCACTTGGTGGAACGTAGTGGGTCAATCCGAGAATCGCCCAGAGAATCCCATTTCATGGTCAGGGTTTAAAGGTCTTGTGCGAGACCATTT
TGGTTGTCGTTTTGCTGCTGTTGAGCTAGAAGCGGAGTTTGTCTCACTTGTTCAAGGGATCATGTCCGTAGAGCAGTACGTTAGGAGGTTCGAAGAGTTGTCCTACCGTG
TCCTGGAGTTGGTTGCCACCGAAGAAAGTAGGATCAACCGGTTCGTCAATGGCCTCCGTGCAGAGATCCGAGGATTGGTCAGCCTTGGTCGACCAGCCACGTTCGCAGCA
ACTCTTGCGAGTGCTCGGATGCTAGATGGTGACACCCCTAGGGCGGAGCAGTCCCAGGAAGTGGGCACGTCGTCTGGTGCCAAGAGGAAGCAGGAAGAGGAAGTGCCTGC
AGCTGGACAGAAAGTCAGAAGCTCTGTGCCAGGGACCAGTGAATGCTTAATGGAGAAAGTCCAGCAAGAGGAGTTCTTGCCCCGGGTCACCGATGAAGAGCTCAAGGCAG
AGTATCCTGAGCTTTATGACGATGACGAGTCTGATGATGAAGATAGCTCCTAA
Protein sequenceShow/hide protein sequence
MLRGYARTWWNVVGQSENRPENPISWSGFKGLVRDHFGCRFAAVELEAEFVSLVQGIMSVEQYVRRFEELSYRVLELVATEESRINRFVNGLRAEIRGLVSLGRPATFAA
TLASARMLDGDTPRAEQSQEVGTSSGAKRKQEEEVPAAGQKVRSSVPGTSECLMEKVQQEEFLPRVTDEELKAEYPELYDDDESDDEDSS