CuGenDBv2

Gene ID	Lag0008144
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Condensin complex subunit 2
Genome location	chr9:13170769..13171985
RNA-Seq Expression	Lag0008144
Synteny	Lag0008144
Gene Ontology terms	GO:0007076 - mitotic chromosome condensation (biological process) GO:0051301 - cell division (biological process) GO:0000793 - condensed chromosome (cellular component) GO:0000796 - condensin complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003682 - chromatin binding (molecular function)
InterPro domains	IPR022816 - Condensin complex subunit 2/barren

Homology

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GenBank top hits

e value

%identity

Alignment

XP_011649987.1 condensin complex subunit 2 [Cucumis sativus]

9.3e-45

88.24

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMS ENR+  SDMIDISFA+DCIEEMVLNMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DN
        DN
Subjt:  DN

XP_022140317.1 condensin complex subunit 2 [Momordica charantia]

3.4e-47

90.29

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDS+EVPGKCMSCENR D SDMIDISFARDCIEEMVLNMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        DNR
Subjt:  DNR

XP_022947155.1 condensin complex subunit 2 [Cucurbita moschata]

1.6e-44

84.47

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AF VDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCE+R + +DMIDISFA+DCIEEMV NMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        DN+
Subjt:  DNR

XP_022970958.1 condensin complex subunit 2 [Cucurbita maxima]

1.6e-44

84.47

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AF VDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCE+R + +DMIDISFA+DCIEEMV NMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        DN+
Subjt:  DNR

XP_038900339.1 condensin complex subunit 2 [Benincasa hispida]

1.4e-45

76.38

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Query:  DSKPLLSKETLRKGRRPLRVAMTLRQEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIE
        + K L    TL      L V     +++ +AFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMS ENR D SDMIDISFA+DCIE
Subjt:  DSKPLLSKETLRKGRRPLRVAMTLRQEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIE

Query:  EMVLNMRMKDEISPTLRNIVSLFDEDN
        EMVLNMR+KDEISPTLRNIV+LFDEDN
Subjt:  EMVLNMRMKDEISPTLRNIVSLFDEDN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LN33 Condensin complex subunit 2

4.5e-45

88.24

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMS ENR+  SDMIDISFA+DCIEEMVLNMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DN
        DN
Subjt:  DN

A0A5D3CCN8 Condensin complex subunit 2

1.0e-44

87.25

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMS ENR+  SDMIDISFA+DCI+EMVLNMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DN
        DN
Subjt:  DN

A0A6J1CGH9 Condensin complex subunit 2

1.7e-47

90.29

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDS+EVPGKCMSCENR D SDMIDISFARDCIEEMVLNMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        DNR
Subjt:  DNR

A0A6J1G622 Condensin complex subunit 2

7.7e-45

84.47

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AF VDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCE+R + +DMIDISFA+DCIEEMV NMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        DN+
Subjt:  DNR

A0A6J1I5E9 Condensin complex subunit 2

7.7e-45

84.47

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AF VDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCE+R + +DMIDISFA+DCIEEMV NMR+KDEISPTLRNIV+LFDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        DN+
Subjt:  DNR

SwissProt top hits

e value

%identity

Alignment

P38170 Condensin complex subunit 2

3.7e-04

42.22

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDS
        +E      +DPL+ +    FDEGGAK LL+N L +    RV+FD+
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDS

Q564K3 Condensin complex subunit 2

3.3e-37

66.99

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AFAVDPLYHQTSAQFDEGGAKGLL+NNLGVYG C+VLFDS E+PGK +S  N+ D S+ ID+SF ++C+E+MVLNMR KDEI P+LR I++ FDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        +N+
Subjt:  DNR

Q9Y7R3 Condensin complex subunit 2

4.4e-05

35.06

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Query:  DSKPLLSKETLRKGRRPLRVAM----TLR-QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDE
        D + L  K+  ++ +R ++  +    ++R ++++L  + DPL+ +  A FDE GAKGLLMN+L V    R++FDS +
Subjt:  DSKPLLSKETLRKGRRPLRVAM----TLR-QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDE

Arabidopsis top hits

e value

%identity

Alignment

AT2G32590.1 LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink).

2.4e-38

66.99

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Query:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE
        +++ +AFAVDPLYHQTSAQFDEGGAKGLL+NNLGVYG C+VLFDS E+PGK +S  N+ D S+ ID+SF ++C+E+MVLNMR KDEI P+LR I++ FDE
Subjt:  QEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNMRMKDEISPTLRNIVSLFDE

Query:  DNR
        +N+
Subjt:  DNR

Sequences

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CDS sequence

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ATGATTGGTGGCGACTCCAAACCTCTCCTCTCGAAAGAGACCCTTAGGAAAGGACGTCGGCCGCTCCGCGTCGCGATGACGTTGCGACAAGAGTATCAATTGGCATTTGC
GGTGGATCCTCTTTATCATCAGACATCTGCTCAATTTGATGAGGGTGGAGCCAAGGGTCTTTTAATGAATAATCTTGGAGTGTATGGTGCATGTAGGGTGCTTTTTGATT
CAGATGAAGTGCCTGGGAAATGTATGTCTTGCGAGAATAGACGTGATGGCTCTGATATGATCGATATCTCTTTTGCCAGAGATTGCATCGAGGAGATGGTATTGAATATG
CGAATGAAGGATGAAATATCTCCAACTTTGAGAAATATAGTCAGTCTATTTGATGAAGATAACAGAGTCTATTTGATGAAGATAACAGACGACCTTCAGATTATTGTAAT
TCAGATCTGA

mRNA sequence

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Protein sequence

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MIGGDSKPLLSKETLRKGRRPLRVAMTLRQEYQLAFAVDPLYHQTSAQFDEGGAKGLLMNNLGVYGACRVLFDSDEVPGKCMSCENRRDGSDMIDISFARDCIEEMVLNM
RMKDEISPTLRNIVSLFDEDNRVYLMKITDDLQIIVIQI

Lag0008144 (gene) of Sponge gourd (AG-4) v1 genome