; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008164 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008164
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:13618373..13618897
RNA-Seq ExpressionLag0008164
SyntenyLag0008164
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-2346.33Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++A+S  +  SN+Y G ITRSRSK    E  Q S +A  +L+++ ES +  I  + N              K + PDVM VMM D+ T E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI+ L+K VEE+D EI +LR QM +++ AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.7e-2346.33Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++A+SK +A S++Y G ITRSRSK       Q S IA  +L+++ ES +  I  + N              K + PDVM VMM DV   E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI++L+K+V+E+D EIA+L+ QM++++ AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.3e-2345.76Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++A+SK +A S++Y G ITRSRSK       Q S IA  +L+++ ES +  I  + N              K + PDVM VMM DV   E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI++L+K+V+E+D EIA+L+ QM++++ AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI +SIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.3e-2345.76Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++A+SK +A S++Y G ITRSRSK       Q S IA  +L+++ ES +  I  + N              K + PDVM VMM DV   E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI++L+K+V+E+D EIA+L+ QM++++ AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI +SIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.7e-2346.33Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++A+SK +A S++Y G ITRSRSK       Q S IA  +L+++ ES +  I  + N              K + PDVM VMM DV   E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI++L+K+V+E+D EIA+L+ QM++++ AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

TrEMBL top hitse value%identityAlignment
A0A5A7SRE2 Ty3-gypsy retrotransposon protein3.4e-2244.63Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        MT  +A+SK +A+S+SY+GL+T+S  K +  E  Q  V+  K L ++ ES +  I  + N              K S  +V+ VMM DV T+E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI+ L+K+VEE+D EIA+L++QM++ + +ESSQTP +K  DKGK + ++    Q S S+ SLS QQLQDMI NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

A0A5A7UF60 Ty3-gypsy retrotransposon protein5.8e-2245.2Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++ +S     S++Y G ITRSRSK    E  Q S +   +L+++ ES +  I  + N              K + PDVM VMM D+ T E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        KKI+ L+K VEE+D EI +LR QM +++ AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.3e-2346.33Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++A+S  +  SN+Y G ITRSRSK    E  Q S +A  +L+++ ES +  I  + N              K + PDVM VMM D+ T E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI+ L+K VEE+D EI +LR QM +++ AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

A0A5D3DIN4 Ty3-gypsy retrotransposon protein1.3e-2144.07Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++ +SK +A S+SY+GL+T+S  K +  E  Q  V+  K L ++ ES +  I  + N              K S  +V+ VMM DV T+E  M E+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        KKI+ L+K+VEE+D EIA+L++QM++ + AESS+TP +K  DKGK + Q+    Q S S+ SLS QQLQDMI+NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

A0A5D3DK07 Ty3-gypsy retrotransposon protein5.8e-2244.63Show/hide
Query:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE
        M  ++ +SK +A S+ Y+GL+T+SR K +  E  Q  V+  K L ++ ES +  I  + N              K S  +V+ VMM DV T+E  MAE+E
Subjt:  MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPN--------------KTSSPDVMFVMMTDVGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR
        +KI+ L+K+VEE+D EIA+L++QM++ + AESSQTP +K  DKGK + Q+    Q S S+ SLS QQLQDMI NSIR
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESQDVAESSQTPAIK--DKGKIIAQDR--SQHSASIDSLSFQQLQDMIMNSIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTCGAAGAAGCTTCTTCAAAGATCGCTGCTTTAAGCAACTCCTATGTGGGGCTAATTACTCGAAGTCGCTCCAAGGAAACCCAACACGAAGACGGCCAAACTTC
TGTCATTGCAAACAAGATGTTGAGACGCATGACAGAATCTTCTCAACTTGAAATTGCCACTCAACCAAACAAAACATCCAGTCCTGATGTGATGTTTGTTATGATGACTG
ATGTTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAGATGGTAGAAGAGAAAGACCAAGAAATCGCTTCTCTCAGGAACCAGATG
GAAAGTCAGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGACAAGGGAAAGATTATTGCACAAGATCGGTCACAACATTCCGCTTCTATTGATTCACTGTCCTT
CCAGCAGCTCCAGGATATGATCATGAATTCCATCAGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTTTCGAAGAAGCTTCTTCAAAGATCGCTGCTTTAAGCAACTCCTATGTGGGGCTAATTACTCGAAGTCGCTCCAAGGAAACCCAACACGAAGACGGCCAAACTTC
TGTCATTGCAAACAAGATGTTGAGACGCATGACAGAATCTTCTCAACTTGAAATTGCCACTCAACCAAACAAAACATCCAGTCCTGATGTGATGTTTGTTATGATGACTG
ATGTTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAGATGGTAGAAGAGAAAGACCAAGAAATCGCTTCTCTCAGGAACCAGATG
GAAAGTCAGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGACAAGGGAAAGATTATTGCACAAGATCGGTCACAACATTCCGCTTCTATTGATTCACTGTCCTT
CCAGCAGCTCCAGGATATGATCATGAATTCCATCAGAGTTTAA
Protein sequenceShow/hide protein sequence
MTFEEASSKIAALSNSYVGLITRSRSKETQHEDGQTSVIANKMLRRMTESSQLEIATQPNKTSSPDVMFVMMTDVGTSEERMAEVEKKISMLLKMVEEKDQEIASLRNQM
ESQDVAESSQTPAIKDKGKIIAQDRSQHSASIDSLSFQQLQDMIMNSIRV