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Lag0008170 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008170
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr9:13745926..13746246
RNA-Seq ExpressionLag0008170
SyntenyLag0008170
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]2.6e-1745.19Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+F+G SE + VVEEWI  LEAL+ +LG + Q +V+GA FMLR  A  WW+VV   E+H   PI+W+  K L+ D++  +    E E +F+ L Q 
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+ V
Subjt:  TMSV
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]2.6e-1745.19Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+FDG SE +   EEWI  LEA + +LG   Q +V+GA FMLR  A  WW+ +   E+H    I W+ FK L+ D++ L       EA+F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+SV
Subjt:  TMSV
XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]6.9e-1847.12Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+FDG SE +  VEEWI  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   E++   PI W+ FK L+ D++         EA+F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+SV
Subjt:  TMSV
XP_022156546.1 uncharacterized protein LOC111023424 [Momordica charantia]2.0e-1743.27Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+F G SE + + EEW+  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   E+H   P+ W+ FK L+ DH+     +   E +F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T++V
Subjt:  TMSV
XP_022158749.1 uncharacterized protein LOC111025213 [Momordica charantia]2.4e-1847.12Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+FDG SE +   EEWI  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   E+H   PI W+ FK L+ D++         EA+F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+SV
Subjt:  TMSV
TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196031.3e-1745.19Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+F+G SE + VVEEWI  LEAL+ +LG + Q +V+GA FMLR  A  WW+VV   E+H   PI+W+  K L+ D++  +    E E +F+ L Q 
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+ V
Subjt:  TMSV
A0A6J1DL73 uncharacterized protein LOC1110221441.3e-1745.19Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+FDG SE +   EEWI  LEA + +LG   Q +V+GA FMLR  A  WW+ +   E+H    I W+ FK L+ D++ L       EA+F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+SV
Subjt:  TMSV
A0A6J1DUM2 uncharacterized protein LOC1110232473.4e-1847.12Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+FDG SE +  VEEWI  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   E++   PI W+ FK L+ D++         EA+F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+SV
Subjt:  TMSV
A0A6J1DVA0 uncharacterized protein LOC1110234249.8e-1843.27Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+F G SE + + EEW+  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   E+H   P+ W+ FK L+ DH+     +   E +F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T++V
Subjt:  TMSV
A0A6J1E0B4 uncharacterized protein LOC1110252131.2e-1847.12Show/hide
Query:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG
        R  PP+FDG SE +   EEWI  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   E+H   PI W+ FK L+ D++         EA+F+ LVQG
Subjt:  RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQG

Query:  TMSV
        T+SV
Subjt:  TMSV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCGAAGCCTCCTTCGTTCGATGGTCACTCTGAAAGTTCTGAAGTGGTAGAAGAATGGATTGCAGCGTTGGAAGCGCTATTTCAATTTCTTGGAGCTAATGCCCA
ACAACGTGTCGAAGGAGCTGCCTTTATGCTCAGACGCTATGCTCGCACTTGGTGGAACGTAGTGCGTCAACCCGAGAATCACCCAGAGAATCCCATTTCATGGTCAGGGT
TTAAAGGTCTTGTGCGAGACCATTTTGGCTTGCGTTTTGCTGATGTTGAGCTAGAAGCGCAATTTATCTCGCTTGTTCAAGGGACCATGTCCGTAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGCGAAGCCTCCTTCGTTCGATGGTCACTCTGAAAGTTCTGAAGTGGTAGAAGAATGGATTGCAGCGTTGGAAGCGCTATTTCAATTTCTTGGAGCTAATGCCCA
ACAACGTGTCGAAGGAGCTGCCTTTATGCTCAGACGCTATGCTCGCACTTGGTGGAACGTAGTGCGTCAACCCGAGAATCACCCAGAGAATCCCATTTCATGGTCAGGGT
TTAAAGGTCTTGTGCGAGACCATTTTGGCTTGCGTTTTGCTGATGTTGAGCTAGAAGCGCAATTTATCTCGCTTGTTCAAGGGACCATGTCCGTAGAGTAG
Protein sequenceShow/hide protein sequence
MRAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQGTMSVE