CuGenDBv2

Gene ID	Lag0008172
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Condensin-2 complex subunit H2
Genome location	chr9:13801439..13808929
RNA-Seq Expression	Lag0008172
Synteny	Lag0008172
Gene Ontology terms	GO:0010032 - meiotic chromosome condensation (biological process) GO:0045739 - positive regulation of DNA repair (biological process) GO:0051306 - mitotic sister chromatid separation (biological process) GO:0000793 - condensed chromosome (cellular component) GO:0000796 - condensin complex (cellular component) GO:0005730 - nucleolus (cellular component) GO:0003682 - chromatin binding (molecular function)
InterPro domains	IPR031737 - Condensin-2 complex subunit H2, C-terminal IPR031739 - Condensin-2 complex subunit H2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061066.1 condensin-2 complex subunit H2 [Cucumis melo var. makuwa]

7.1e-24

89.86

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H AAAHFDN EAYEPEFPDSRSSLEDLC S+L ALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

KAE8652044.1 hypothetical protein Csa_018636 [Cucumis sativus]

1.1e-24

91.3

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H AAAHFDNGEAYEPEFPDSRSSLEDLC S+L ALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

XP_016899903.1 PREDICTED: condensin-2 complex subunit H2 [Cucumis melo]

7.1e-24

89.86

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H AAAHFDN EAYEPEFPDSRSSLEDLC S+L ALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

XP_031737049.1 condensin-2 complex subunit H2 [Cucumis sativus]

1.1e-24

91.3

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H AAAHFDNGEAYEPEFPDSRSSLEDLC S+L ALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

XP_038885607.1 condensin-2 complex subunit H2 [Benincasa hispida]

1.6e-23

88.41

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H  AAHFDNGEAYEP+FPDSRSSLEDLC S+L ALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K0I9 Condensin-2 complex subunit H2

1.0e-23

86.96

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H  AAHFDNGEAYEPEFPDSRSSLEDLC S+L ALLASIAE+EKQTEMATRVSTWKQNIEHNLE+QD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

A0A0A0LK75 Condensin-2 complex subunit H2

4.5e-24

88.41

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H  AAHFDNGEAYEPEFPDSRSSLEDLC S+L ALLASIAE+EKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

A0A1S4DVA5 Condensin-2 complex subunit H2

3.5e-24

89.86

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H AAAHFDN EAYEPEFPDSRSSLEDLC S+L ALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

A0A5A7V3H6 Condensin-2 complex subunit H2

3.5e-24

89.86

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Query:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE
        +H AAAHFDN EAYEPEFPDSRSSLEDLC S+L ALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD+
Subjt:  QHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDE

A0A6J1CB98 Condensin-2 complex subunit H2

8.0e-21

84.62

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Query:  AAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD
        AAAHF+NGE YEPE+PDS++SLEDLC S+L ALLASIAETEKQTEMA RVSTWKQ IEHNLEEQD
Subjt:  AAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD

SwissProt top hits

e value

%identity

Alignment

Q9LUR0 Condensin-2 complex subunit H2

6.5e-12

56.52

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Query:  MQHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD
        M    AA F N + +E    + + SLEDLC S+L ALLA+IA++EKQT++A RVSTWKQ IE NLEEQ+
Subjt:  MQHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD

Arabidopsis top hits

e value

%identity

Alignment

AT3G16730.1 CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

4.6e-13

56.52

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Query:  MQHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD
        M    AA F N + +E    + + SLEDLC S+L ALLA+IA++EKQT++A RVSTWKQ IE NLEEQ+
Subjt:  MQHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQD

Sequences

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CDS sequence

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ATGGCTTTGATGCAGCATGTTGCAGCAGCTCATTTTGATAATGGTGAAGCATATGAACCTGAATTTCCAGATTCTCGTTCAAGTCTAGAAGATCTTTGCTGCTCTAATCT
TTACGCACTCCTTGCAAGCATTGCTGAGACTGAGAAGCAGACTGAAATGGCCACTCGAGTCTCTACATGGAAACAGAACATTGAACACAATTTGGAAGAGCAAGATGAAA
AAATTATGGTTGAGATGAAGATGAAAAACTTGAACATTGCTCTAAATCCAATTATCCAAAATGAGCCTCTAGAATTGCATAAAGGCTACATATTTATAGAAAACACGACG
GCGTCAAGACGCCAAGGGCAGCGTCTTGACGTTGCGAACTATACACTCCGGCCAAATTTCGGGTCGGCGTCGAGACGCCAAGGGCAGCGTCTCGACACCAACGTTGATCC
ATGCCTTGATGTTTATTTTCTCGGTCTTTTCTCGTTTCTTCTCGATACGGGGCTTCAATCTTCGGCTTTTGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGGTCTT
TTCACCTCTTTGCCGTCCAAGACATCGAGATGGCTCCAAAACTCCGTAATTGGCCCAAATTAACACCAATTAGGTTACATCTATCTCAAGAGTTGAGAGTGTCTCGATGT
AGTGGGAGGATTGTTCCACAACCTGACCGTTACGTGGGCTTAACTGAAGCTCAAATCTTCATACCTGATGATGGCATTGAGGTCAATAAGCCGTTTTACCCCTATAGTAC
TTCTAGTTCCTTAAGTCCCACTGATCCTCTAATGAACAATTGGTTTATGGTCCAACCAATAAACCGAGTCCCTCTCGGGCCAATGAGAGGGCGGGATCCCTTTGTTCAAG
CCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTTATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAGCTATCTACCCGTTCCTATCCCT
GAAATTGGAGGCTTATTGAGTCGGCGATACTGA

mRNA sequence

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Protein sequence

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MALMQHVAAAHFDNGEAYEPEFPDSRSSLEDLCCSNLYALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDEKIMVEMKMKNLNIALNPIIQNEPLELHKGYIFIENTT
ASRRQGQRLDVANYTLRPNFGSASRRQGQRLDTNVDPCLDVYFLGLFSFLLDTGLQSSAFGVILQARFNTIGSFHLFAVQDIEMAPKLRNWPKLTPIRLHLSQELRVSRC
SGRIVPQPDRYVGLTEAQIFIPDDGIEVNKPFYPYSTSSSLSPTDPLMNNWFMVQPINRVPLGPMRGRDPFVQAPESALKGTTSLLSLIRVGVNSFLHDYVPSYLPVPIP
EIGGLLSRRY

Lag0008172 (gene) of Sponge gourd (AG-4) v1 genome