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Lag0008184 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008184
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationchr9:14152920..14157005
RNA-Seq ExpressionLag0008184
SyntenyLag0008184
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]2.7e-2664.52Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKKG
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG

KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-2664.52Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKKG
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]3.0e-2564.89Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKKG
        ++E+AS F+SMT N SFM+TM PSYIHTGK    IPK+FA +++K+S+EI L  SDGRVWKIWCG+R S   NK  EMR GWKAFARDNSL++G
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKKG

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]2.7e-2664.52Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKKG
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]3.5e-2664.52Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKKG
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG

TrEMBL top hitse value%identityAlignment
A0A5A7TS22 B3 domain-containing transcription factor VRN1-like6.2e-2149.02Show/hide
Query:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK
        P+ T  +  + ++AS+FKS   NPSFMVTM PSYI TG +YL +P+ F   Y+KES ++ L V DGR W++WCG+R +    + E++ GWK FA DN LK
Subjt:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK

Query:  KG
        +G
Subjt:  KG

A0A6J1E0D8 B3 domain-containing protein At4g01580-like1.4e-2564.89Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKKG
        ++E+AS F+SMT N SFM+TM PSYIHTGK    IPK+FA +++K+S+EI L  SDGRVWKIWCG+R S   NK  EMR GWKAFARDNSL++G
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKKG

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like1.3e-2664.52Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKKG
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like2.1e-2462.37Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG
        I+E+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP  FAN +++  KE+ + VSDGRVWKI CG R   G  + EMR GW+ FARDN LKKG
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKG

A0A6J1L7I9 B3 domain-containing transcription factor VRN1-like6.2e-2152.94Show/hide
Query:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK
        P T  QE R+   AS FK  T NPSFMVTM PSYI TG +YL +P++FA  YL+ES ++ L V+DGR+W +WCG+R +    + E++ GWK FA DN LK
Subjt:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK

Query:  KG
        +G
Subjt:  KG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATTTGAAACCTCTCAAAGTGATAAAGTCGGAAAAGTTTCCGATTAAGCATCCATCAACTACAACACAAGAAGCAAGAATTAGTGAAAAAGCTTCAAAATTCAA
ATCAATGACTGCAAATCCTTCTTTTATGGTTACAATGTGCCCTTCATACATTCATACTGGAAAAAGTTATCTGGGTATTCCAAAAGCCTTTGCAAATATGTATCTGAAGG
AATCCAAAGAGATCATTCTTCGAGTTTCAGATGGAAGGGTTTGGAAGATTTGGTGTGGTATGCGTTTGTCTCATGGAACAAACAAGTTTGAAATGAGACATGGTTGGAAG
GCATTTGCTAGAGATAATAGCTTGAAAAAAGGCGTGAGCTTAAACCTTATGCCTCTTTCGGTTTATCCAAAGTTAGGAATAGGTGAAGCTAAGCCTACAACAGTCACACT
CCAATTAGCAGATAGGTCTATCACATATCCTGAGGGTAAGATTGAGGATGTTCTGGTCCAGCAACCTGAGATTAGGAAATCCTTCCTTGATGAGCGGAAAAGCCAGAAGA
GGAGAAAAGAAGATGAAGGGAATGAAGTTGAGATTGAGAGGGAACTGAGGGAAGAAGTTGAGCTTGATGAAGGATTTCGGTACGGGAGATTTATCCATGAAGAGGCAAGA
CAAAAATATCACGAAGTCCTGAAGCGAGATGTTCAAATGGAGCGCGCTTCGATGATGGCAAAGAGCTCCCACATTTTCTTTGAGCAAGTATCACTAATAACGTTGGGAAC
GGTTGTGCGCAAAGCTGGAGCCCACTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATTTGAAACCTCTCAAAGTGATAAAGTCGGAAAAGTTTCCGATTAAGCATCCATCAACTACAACACAAGAAGCAAGAATTAGTGAAAAAGCTTCAAAATTCAA
ATCAATGACTGCAAATCCTTCTTTTATGGTTACAATGTGCCCTTCATACATTCATACTGGAAAAAGTTATCTGGGTATTCCAAAAGCCTTTGCAAATATGTATCTGAAGG
AATCCAAAGAGATCATTCTTCGAGTTTCAGATGGAAGGGTTTGGAAGATTTGGTGTGGTATGCGTTTGTCTCATGGAACAAACAAGTTTGAAATGAGACATGGTTGGAAG
GCATTTGCTAGAGATAATAGCTTGAAAAAAGGCGTGAGCTTAAACCTTATGCCTCTTTCGGTTTATCCAAAGTTAGGAATAGGTGAAGCTAAGCCTACAACAGTCACACT
CCAATTAGCAGATAGGTCTATCACATATCCTGAGGGTAAGATTGAGGATGTTCTGGTCCAGCAACCTGAGATTAGGAAATCCTTCCTTGATGAGCGGAAAAGCCAGAAGA
GGAGAAAAGAAGATGAAGGGAATGAAGTTGAGATTGAGAGGGAACTGAGGGAAGAAGTTGAGCTTGATGAAGGATTTCGGTACGGGAGATTTATCCATGAAGAGGCAAGA
CAAAAATATCACGAAGTCCTGAAGCGAGATGTTCAAATGGAGCGCGCTTCGATGATGGCAAAGAGCTCCCACATTTTCTTTGAGCAAGTATCACTAATAACGTTGGGAAC
GGTTGTGCGCAAAGCTGGAGCCCACTATTGA
Protein sequenceShow/hide protein sequence
MADLKPLKVIKSEKFPIKHPSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWK
AFARDNSLKKGVSLNLMPLSVYPKLGIGEAKPTTVTLQLADRSITYPEGKIEDVLVQQPEIRKSFLDERKSQKRRKEDEGNEVEIERELREEVELDEGFRYGRFIHEEAR
QKYHEVLKRDVQMERASMMAKSSHIFFEQVSLITLGTVVRKAGAHY