; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008190 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008190
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr9:14351447..14352291
RNA-Seq ExpressionLag0008190
SyntenyLag0008190
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052371.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.2e-1462.32Show/hide
Query:  SVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCY
        +V+M+Q  GF+   +  +VC LKKALYGLKQAPRAWYE LS  L SLGF+ SK D+SL+IR T T+CCY
Subjt:  SVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCY

KAE8659142.1 Detected protein of confused Function [Hibiscus syriacus]1.3e-1331.52Show/hide
Query:  LANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW------------------------------------------------------
        ++N HPM+TR K G +KPK      ++A  D EP ++ EA  SS W                                                      
Subjt:  LANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW------------------------------------------------------

Query:  -------------HSVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
                       V+M QP G++  GN  LVC+L KA+YGLKQAPRAW+ERL  YL S GF ++K D+SL +R+T  +  Y+
Subjt:  -------------HSVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

KAE8713459.1 hypothetical protein F3Y22_tig00110209pilonHSYRG00092 [Hibiscus syriacus]4.5e-1436.42Show/hide
Query:  SQSQATTPISSLPLANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW-------------------HSVFMDQPSGFKNVGNQH--LV
        +QS +   +SS  +A +H M+TR+K G FKPK  +S      ++ EP S+++AL+S  W                     V+M QP GF+ V +    LV
Subjt:  SQSQATTPISSLPLANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW-------------------HSVFMDQPSGFKNVGNQH--LV

Query:  CRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        C+L +ALYGL+QAPR WY +L  +L  +GF++S  D SL + +      YV
Subjt:  CRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

KAG9453120.1 hypothetical protein H6P81_006024 [Aristolochia fimbriata]5.8e-1459.42Show/hide
Query:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        V+M QPSGF++  N   VCRL K+LYGLKQ+PRAWY+RL+ YL  LGF +SK DSSL++R T T   +V
Subjt:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

RVW13475.1 Tubulin beta-8 chain [Vitis vinifera]9.6e-1742.21Show/hide
Query:  SNSTDS-VAHPTSTSQSQATTPISSLPLANTHPMVTRAKVGFFKPKALV-------SETSIAYDDSEPPSV---REALKSSHWHSVFMDQPSGFKNVGNQ
        SN T S V H  S+    + T   +    NTHPM+TRAK G  KPK  +       ++ ++   D    ++    +AL+    H VFM QP GF +  N 
Subjt:  SNSTDS-VAHPTSTSQSQATTPISSLPLANTHPMVTRAKVGFFKPKALV-------SETSIAYDDSEPPSV---REALKSSHWHSVFMDQPSGFKNVGNQ

Query:  HLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        +LVCRL KALYGLKQAPRAW+E+L   L S GF  +K D SL +R T +   YV
Subjt:  HLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

TrEMBL top hitse value%identityAlignment
A0A2N9IZG0 Uncharacterized protein3.2e-1838.71Show/hide
Query:  PSNSTDSVAHPTSTSQSQATTPISSLPL--------ANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHWHS---VFMDQPSGFKNVGN
        P+    S  H ++        P+   PL        +N+HPM TR K G FKPK    +  + Y  +EPP+ + A + S WHS     + QP G+ +  N
Subjt:  PSNSTDSVAHPTSTSQSQATTPISSLPL--------ANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHWHS---VFMDQPSGFKNVGN

Query:  QHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
         H VC+L K++YGLKQAPRAW+ER +  L   GF  S  D SL I +T TT  Y+
Subjt:  QHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

A0A438BR79 Tubulin beta-8 chain4.7e-1742.21Show/hide
Query:  SNSTDS-VAHPTSTSQSQATTPISSLPLANTHPMVTRAKVGFFKPKALV-------SETSIAYDDSEPPSV---REALKSSHWHSVFMDQPSGFKNVGNQ
        SN T S V H  S+    + T   +    NTHPM+TRAK G  KPK  +       ++ ++   D    ++    +AL+    H VFM QP GF +  N 
Subjt:  SNSTDS-VAHPTSTSQSQATTPISSLPLANTHPMVTRAKVGFFKPKALV-------SETSIAYDDSEPPSV---REALKSSHWHSVFMDQPSGFKNVGNQ

Query:  HLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        +LVCRL KALYGLKQAPRAW+E+L   L S GF  +K D SL +R T +   YV
Subjt:  HLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

A0A5A7UFS3 Putative mitochondrial protein5.7e-1562.32Show/hide
Query:  SVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCY
        +V+M+Q  GF+   +  +VC LKKALYGLKQAPRAWYE LS  L SLGF+ SK D+SL+IR T T+CCY
Subjt:  SVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCY

A0A6A2WII0 Detected protein of confused Function6.3e-1431.52Show/hide
Query:  LANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW------------------------------------------------------
        ++N HPM+TR K G +KPK      ++A  D EP ++ EA  SS W                                                      
Subjt:  LANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW------------------------------------------------------

Query:  -------------HSVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
                       V+M QP G++  GN  LVC+L KA+YGLKQAPRAW+ERL  YL S GF ++K D+SL +R+T  +  Y+
Subjt:  -------------HSVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

A0A6A3BFF5 Integrase catalytic domain-containing protein2.2e-1436.42Show/hide
Query:  SQSQATTPISSLPLANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW-------------------HSVFMDQPSGFKNVGNQH--LV
        +QS +   +SS  +A +H M+TR+K G FKPK  +S      ++ EP S+++AL+S  W                     V+M QP GF+ V +    LV
Subjt:  SQSQATTPISSLPLANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHW-------------------HSVFMDQPSGFKNVGNQH--LV

Query:  CRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        C+L +ALYGL+QAPR WY +L  +L  +GF++S  D SL + +      YV
Subjt:  CRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.9e-0951.11Show/hide
Query:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSS
        ++M+QP GF+  G +H+VC+L K+LYGLKQAPR WY +   ++ S
Subjt:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSS

P25600 Putative transposon Ty5-1 protein YCL074W3.3e-0433.77Show/hide
Query:  LKSSHWHSVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        L S+    +++ QP GF N  N   V  L   +YGLKQAP  W E ++  L  +GF   + +  L  R T     Y+
Subjt:  LKSSHWHSVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.8e-1149.28Show/hide
Query:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        V+M QP GF +    + VC+L+KALYGLKQAPRAWY  L  YL ++GF  S  D+SL + Q   +  Y+
Subjt:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.3e-1149.28Show/hide
Query:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV
        V+M QP GF +      VCRL+KA+YGLKQAPRAWY  L  YL ++GF  S  D+SL + Q   +  Y+
Subjt:  VFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYV

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 86.9e-0536.76Show/hide
Query:  VFMDQPSGFKNVGNQHL----VCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYT
        ++M  P G+       L    VC LKK++YGLKQA R W+ + S  L   GF  S  D +  ++ T T
Subjt:  VFMDQPSGFKNVGNQHL----VCRLKKALYGLKQAPRAWYERLSFYLSSLGFKISKVDSSLMIRQTYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTCTAACTCGACAGATTCTGTTGCCCATCCTACTTCCACTTCTCAGTCTCAAGCTACTACCCCTATCTCATCCCTTCCTCTAGCTAACACGCATCCCATGGTCAC
TAGAGCAAAGGTTGGTTTTTTTAAACCAAAGGCCTTAGTCTCTGAAACATCTATTGCCTATGATGACTCTGAACCTCCTAGTGTCAGGGAAGCTCTTAAGAGTTCCCATT
GGCATTCTGTTTTTATGGATCAACCTAGTGGCTTTAAGAACGTAGGAAATCAACATCTTGTTTGCCGCCTTAAGAAGGCCTTATACGGACTGAAACAAGCTCCCCGTGCC
TGGTACGAACGCTTAAGCTTTTATCTTAGTTCCCTTGGTTTTAAAATCTCAAAGGTCGATTCTTCCTTGATGATTCGCCAAACTTATACTACTTGCTGCTATGTTGAATC
TAAGTGGATGATATTATCATCATGGGCAATTCCAATTCTACGATTGACAAGCTTATTTGCTCTCTCAATGCTCAATTTGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTCTAACTCGACAGATTCTGTTGCCCATCCTACTTCCACTTCTCAGTCTCAAGCTACTACCCCTATCTCATCCCTTCCTCTAGCTAACACGCATCCCATGGTCAC
TAGAGCAAAGGTTGGTTTTTTTAAACCAAAGGCCTTAGTCTCTGAAACATCTATTGCCTATGATGACTCTGAACCTCCTAGTGTCAGGGAAGCTCTTAAGAGTTCCCATT
GGCATTCTGTTTTTATGGATCAACCTAGTGGCTTTAAGAACGTAGGAAATCAACATCTTGTTTGCCGCCTTAAGAAGGCCTTATACGGACTGAAACAAGCTCCCCGTGCC
TGGTACGAACGCTTAAGCTTTTATCTTAGTTCCCTTGGTTTTAAAATCTCAAAGGTCGATTCTTCCTTGATGATTCGCCAAACTTATACTACTTGCTGCTATGTTGAATC
TAAGTGGATGATATTATCATCATGGGCAATTCCAATTCTACGATTGACAAGCTTATTTGCTCTCTCAATGCTCAATTTGCTCTAA
Protein sequenceShow/hide protein sequence
MPSNSTDSVAHPTSTSQSQATTPISSLPLANTHPMVTRAKVGFFKPKALVSETSIAYDDSEPPSVREALKSSHWHSVFMDQPSGFKNVGNQHLVCRLKKALYGLKQAPRA
WYERLSFYLSSLGFKISKVDSSLMIRQTYTTCCYVESKWMILSSWAIPILRLTSLFALSMLNLL