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Lag0008197 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008197
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationchr9:14399342..14402637
RNA-Seq ExpressionLag0008197
SyntenyLag0008197
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]6.3e-2662.11Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKK ++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL

KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.3e-2662.11Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKK ++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]1.2e-2464.52Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKK
        ++E+AS F+SMT N SFM+TM PSYIHTGK    IPK+FA +++K+S+EI L  SDGRVWKIWCG+R S   NK  EMR GWKAFARDNSL++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKK

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]6.3e-2662.11Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKK ++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]8.2e-2662.11Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKK ++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL

TrEMBL top hitse value%identityAlignment
A0A1S3C6V0 B3 domain-containing transcription factor VRN1-like1.1e-2047.12Show/hide
Query:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK
        P+ T  +  + ++AS+FKS   NPSFMVTM PSYI TG +YL +P+ F   Y+KES ++ L V DGR W++WCG+R +    + E++ GWK FA DN LK
Subjt:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK

Query:  KEEL
        + ++
Subjt:  KEEL

A0A5A7TS22 B3 domain-containing transcription factor VRN1-like1.1e-2047.12Show/hide
Query:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK
        P+ T  +  + ++AS+FKS   NPSFMVTM PSYI TG +YL +P+ F   Y+KES ++ L V DGR W++WCG+R +    + E++ GWK FA DN LK
Subjt:  PSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLK

Query:  KEEL
        + ++
Subjt:  KEEL

A0A6J1E0D8 B3 domain-containing protein At4g01580-like5.7e-2564.52Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKK
        ++E+AS F+SMT N SFM+TM PSYIHTGK    IPK+FA +++K+S+EI L  SDGRVWKIWCG+R S   NK  EMR GWKAFARDNSL++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKK

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like3.0e-2662.11Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL
        ISE+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP+ FAN +++  KE+ + VSDGRVWKI CG R  HG  + EMR GW+ FARDN LKK ++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like4.8e-2460Show/hide
Query:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL
        I+E+A+KF+S+T NPSFMVTM  SY+HTGKSYL IP  FAN +++  KE+ + VSDGRVWKI CG R   G  + EMR GW+ FARDN LKK ++
Subjt:  ISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKKEEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATTTGAAACCTCTCAAAGTGATAAAGTCGGAAAAGTTTCCGATTAAGCATCCATCAACTACAACACAAGAAGCAAGAATTAGTGAAAAAGCTTCAAAATTCAA
ATCAATGACTGCAAATCCTTCTTTTATGGTTACAATGTGCCCTTCATACATTCATACTGGAAAAAGTTATCTGGGTATTCCAAAAGCCTTTGCAAATATGTATCTGAAGG
AATCCAAAGAGATCATTCTTCGAGTTTCAGATGGAAGGGTTTGGAAGATTTGGTGTGGTATGCGTTTGTCTCATGGAACAAACAAGTTTGAAATGAGACATGGTTGGAAG
GCATTTGCTAGAGATAATAGCTTGAAAAAAGAGGAACTCGTGACAGGTAGCTATAACGTTGCTAAATGGAATCAAGATGGCTCACAAAGCTGGACTTGGACCATTATGGA
ATCAACTGGTGGGAAGGATGTATTGTTCACCAAGTTCATATCTTCTTTGGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATTTGAAACCTCTCAAAGTGATAAAGTCGGAAAAGTTTCCGATTAAGCATCCATCAACTACAACACAAGAAGCAAGAATTAGTGAAAAAGCTTCAAAATTCAA
ATCAATGACTGCAAATCCTTCTTTTATGGTTACAATGTGCCCTTCATACATTCATACTGGAAAAAGTTATCTGGGTATTCCAAAAGCCTTTGCAAATATGTATCTGAAGG
AATCCAAAGAGATCATTCTTCGAGTTTCAGATGGAAGGGTTTGGAAGATTTGGTGTGGTATGCGTTTGTCTCATGGAACAAACAAGTTTGAAATGAGACATGGTTGGAAG
GCATTTGCTAGAGATAATAGCTTGAAAAAAGAGGAACTCGTGACAGGTAGCTATAACGTTGCTAAATGGAATCAAGATGGCTCACAAAGCTGGACTTGGACCATTATGGA
ATCAACTGGTGGGAAGGATGTATTGTTCACCAAGTTCATATCTTCTTTGGTGTAA
Protein sequenceShow/hide protein sequence
MADLKPLKVIKSEKFPIKHPSTTTQEARISEKASKFKSMTANPSFMVTMCPSYIHTGKSYLGIPKAFANMYLKESKEIILRVSDGRVWKIWCGMRLSHGTNKFEMRHGWK
AFARDNSLKKEELVTGSYNVAKWNQDGSQSWTWTIMESTGGKDVLFTKFISSLV