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Lag0008202 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008202
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr9:14519717..14520505
RNA-Seq ExpressionLag0008202
SyntenyLag0008202
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]1.3e-3143.65Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        ++V QYERKFT LSRFA +L+     KIKRF+KGL + IRG V L RP ++AEA+ GALIMDK+V+ K        SSS VKRK  P   +   +  + Q
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPGKSRVRTARV
         + +    P+C  C+K H GQC TG K CF+CG+  H+A+ CP      Q      +P    Q   QRARVFAL +++    + V  G  R R  RV
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPGKSRVRTARV

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]3.1e-3053.52Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        +TV QYERKFT LSRFA +L+ T   KIKRF+KGLR+ IRG V L RP T+AEA+ GALIMDK+V+ +VQP     SSS VKRK  P   +QP +   Q+
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC
        P +Q    P+C  C+K + GQC TG   CF+C + GH+A+ C
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]2.8e-3446.81Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        ++V QYERKFT LSRFA +L+ T   KIKRF+KGLR+ IRG V L RPTT+AEA+ GAL+MDK+V+ K  P     SSS VKRK P    +   +  ++Q
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPG
         + Q    P+C  C+K H GQC TG K CF+CG+ GH+A+ CP      Q       P    Q   QRARVFAL +++    + V  G
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPG

XP_022158750.1 uncharacterized protein LOC111025215 [Momordica charantia]3.1e-2541.08Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        +TV +YERKFT LSRF    + T + KI +FI GLR EI+G + L  PTT+A A+  AL+MDK    + Q +    SSS VKRK      +QP +  +  
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDV
         +RQ  A P+C  C+K H G C  G+++C++C K GH+A+ CP  G   Q         A  Q    RARVFAL +   E  + V
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDV

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]3.5e-2952.11Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        +TV QYERKFT LS FA +L+ T   KIKRF+KGLR+ IRG V L RP T+AEA+ G LIMD +V+  VQP     SSS VKRK  P   +QP +   Q+
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC
        P +Q    P+C  C+K   GQC TG + CF+CG+ GH+A+ C
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC

TrEMBL top hitse value%identityAlignment
A0A6J1DL73 uncharacterized protein LOC1110221446.2e-3243.65Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        ++V QYERKFT LSRFA +L+     KIKRF+KGL + IRG V L RP ++AEA+ GALIMDK+V+ K        SSS VKRK  P   +   +  + Q
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPGKSRVRTARV
         + +    P+C  C+K H GQC TG K CF+CG+  H+A+ CP      Q      +P    Q   QRARVFAL +++    + V  G  R R  RV
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPGKSRVRTARV

A0A6J1DQJ4 uncharacterized protein LOC1110228851.5e-3053.52Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        +TV QYERKFT LSRFA +L+ T   KIKRF+KGLR+ IRG V L RP T+AEA+ GALIMDK+V+ +VQP     SSS VKRK  P   +QP +   Q+
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC
        P +Q    P+C  C+K + GQC TG   CF+C + GH+A+ C
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC

A0A6J1DUM2 uncharacterized protein LOC1110232471.3e-3446.81Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        ++V QYERKFT LSRFA +L+ T   KIKRF+KGLR+ IRG V L RPTT+AEA+ GAL+MDK+V+ K  P     SSS VKRK P    +   +  ++Q
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPG
         + Q    P+C  C+K H GQC TG K CF+CG+ GH+A+ CP      Q       P    Q   QRARVFAL +++    + V  G
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPG

A0A6J1DWP4 uncharacterized protein LOC1110252151.5e-2541.08Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        +TV +YERKFT LSRF    + T + KI +FI GLR EI+G + L  PTT+A A+  AL+MDK    + Q +    SSS VKRK      +QP +  +  
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDV
         +RQ  A P+C  C+K H G C  G+++C++C K GH+A+ CP  G   Q         A  Q    RARVFAL +   E  + V
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDV

A0A6J1DYU5 uncharacterized protein LOC1110255171.7e-2952.11Show/hide
Query:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ
        +TV QYERKFT LS FA +L+ T   KIKRF+KGLR+ IRG V L RP T+AEA+ G LIMD +V+  VQP     SSS VKRK  P   +QP +   Q+
Subjt:  MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQ

Query:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC
        P +Q    P+C  C+K   GQC TG + CF+CG+ GH+A+ C
Subjt:  PERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGTAGTGCAGTACGAGAGAAAGTTTACTGCGCTATCACGCTTTGCTCCTGACCTGGTCAGCACGCCGGAGCGAAAGATCAAGAGGTTCATTAAGGGCCTCCGTGA
GGAGATTCGTGGTTCTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAGGCACTCACAGGCGCGTTGATCATGGATAAAAACGTGGCAAGAAAAGTGCAACCTCGTTGGG
GAGAACCTTCTTCGTCAAGAGTTAAAAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAGGTCCAACGCCAACAACCTGAGAGACAGGCTCCTGCCATACCCTTG
TGCAACGTGTGCCGCAAGCACCACGTGGGTCAGTGTGACACAGGTGAGAAAGTCTGTTTCAAGTGTGGAAAGGTAGGGCACTATGCGAAATGGTGTCCCACCAAAGGCGA
GCCTAATCAAGAAAAGCCAGTTTTGAGAGCCCCTCAAGCGCCAGGACAAGCTGTCAAGCAACGGGCGCGTGTCTTTGCGCTCATAAAAGAGAAGGATGAAGTTGGCGATG
ATGTAGCGCCAGGCAAATCTCGAGTTAGAACCGCTAGGGTATCTCCCTTTGATGCCTTGGCATCTCAAATCTCTGTGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCGTAGTGCAGTACGAGAGAAAGTTTACTGCGCTATCACGCTTTGCTCCTGACCTGGTCAGCACGCCGGAGCGAAAGATCAAGAGGTTCATTAAGGGCCTCCGTGA
GGAGATTCGTGGTTCTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAGGCACTCACAGGCGCGTTGATCATGGATAAAAACGTGGCAAGAAAAGTGCAACCTCGTTGGG
GAGAACCTTCTTCGTCAAGAGTTAAAAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAGGTCCAACGCCAACAACCTGAGAGACAGGCTCCTGCCATACCCTTG
TGCAACGTGTGCCGCAAGCACCACGTGGGTCAGTGTGACACAGGTGAGAAAGTCTGTTTCAAGTGTGGAAAGGTAGGGCACTATGCGAAATGGTGTCCCACCAAAGGCGA
GCCTAATCAAGAAAAGCCAGTTTTGAGAGCCCCTCAAGCGCCAGGACAAGCTGTCAAGCAACGGGCGCGTGTCTTTGCGCTCATAAAAGAGAAGGATGAAGTTGGCGATG
ATGTAGCGCCAGGCAAATCTCGAGTTAGAACCGCTAGGGTATCTCCCTTTGATGCCTTGGCATCTCAAATCTCTGTGATGTGA
Protein sequenceShow/hide protein sequence
MTVVQYERKFTALSRFAPDLVSTPERKIKRFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSRVKRKPPPVMENQPQKVQRQQPERQAPAIPL
CNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQAPGQAVKQRARVFALIKEKDEVGDDVAPGKSRVRTARVSPFDALASQISVM