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Lag0008209 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008209
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:14798941..14799395
RNA-Seq ExpressionLag0008209
SyntenyLag0008209
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032178.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.0e-1850Show/hide
Query:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV
        M S+   SK  SD    P TR  LR+ ++ +      +      +E +  ++MSVM+ D+ T E  MAELE+KV+MLMK VEERDY+I SLKNHIESRD 
Subjt:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV

Query:  VESSQTRAAKNNDKGKTVMQEN
         ESS     KN DKGKTVMQE+
Subjt:  VESSQTRAAKNNDKGKTVMQEN
KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-1762.96Show/hide
Query:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
        + ++E +  ++MSVM+ D+ T E RM ELE+KV+MLMK VEERDYEIASLKNHIESRD  ESS     KN DKGK VMQE+
Subjt:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
KAA0050708.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-1749.59Show/hide
Query:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV
        M SK    K  ++    P TR   R+ ++ ++  PL         ET   ++MSVM+ ++ T E+RM +LE+K++ML+K VEERDYEIASLKNHIESRD 
Subjt:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV

Query:  VESSQTRAAKNNDKGKTVMQE
         ESS T  AKN DKGK VMQE
Subjt:  VESSQTRAAKNNDKGKTVMQE
KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-1765.38Show/hide
Query:  KETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
        +E    ++MSVM+ D+ T E+RMAELE+KV+MLMKAVEERD+EIASLKNHIESRD +ESS T   KN +KGK +MQE+
Subjt:  KETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-1764.2Show/hide
Query:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
        + ++E    ++MSVM+ D+ T E RMAELE+KV+MLMKAVEERDYEIASLKNHIES D  ESS T   KN DKGKT++QE+
Subjt:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
TrEMBL top hitse value%identityAlignment
A0A5A7SNH0 Ty3-gypsy retrotransposon protein3.9e-1850Show/hide
Query:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV
        M S+   SK  SD    P TR  LR+ ++ +      +      +E +  ++MSVM+ D+ T E  MAELE+KV+MLMK VEERDY+I SLKNHIESRD 
Subjt:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV

Query:  VESSQTRAAKNNDKGKTVMQEN
         ESS     KN DKGKTVMQE+
Subjt:  VESSQTRAAKNNDKGKTVMQEN
A0A5A7U601 Ty3-gypsy retrotransposon protein1.1e-1749.59Show/hide
Query:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV
        M SK    K  ++    P TR   R+ ++ ++  PL         ET   ++MSVM+ ++ T E+RM +LE+K++ML+K VEERDYEIASLKNHIESRD 
Subjt:  MASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDV

Query:  VESSQTRAAKNNDKGKTVMQE
         ESS T  AKN DKGK VMQE
Subjt:  VESSQTRAAKNNDKGKTVMQE
A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.1e-1765.38Show/hide
Query:  KETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
        +E    ++MSVM+ D+ T E+RMAELE+KV+MLMKAVEERD+EIASLKNHIESRD +ESS T   KN +KGK +MQE+
Subjt:  KETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
A0A5D3C4W1 Ty3-gypsy retrotransposon protein1.9e-1762.96Show/hide
Query:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
        + ++E +  ++MSVM+ D+ T E RM ELE+KV+MLMK VEERDYEIASLKNHIESRD  ESS     KN DKGK VMQE+
Subjt:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
A0A5D3C857 Ty3-gypsy retrotransposon protein8.7e-1864.2Show/hide
Query:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
        + ++E    ++MSVM+ D+ T E RMAELE+KV+MLMKAVEERDYEIASLKNHIES D  ESS T   KN DKGKT++QE+
Subjt:  YRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAAKNNDKGKTVMQEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCTTCCAAGAAAGCTGCTTCCAAGACTTCAAGCGACTCCTACGTGGGACCAGTTACTCGGGACGCTCTAAGGAAATTCAGAAATCAGAAGAAGAACAAGCCTTT
GTCATTGCAAATATGTTATAGAGCAAAAGAGACATCAGATGCTGACGTGATGTCTGTAATGATGGCCGACATAGGTACAGGTGAAGAAAGAATGGCTGAACTGGAAAGAA
AAGTCAGCATGTTGATGAAGGCGGTTGAGGAGAGAGATTATGAAATTGCATCTCTGAAGAATCACATAGAAAGTCGTGATGTCGTTGAGTCAAGCCAAACACGAGCTGCA
AAGAATAATGACAAAGGGAAGACTGTCATGCAAGAAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGCTTCCAAGAAAGCTGCTTCCAAGACTTCAAGCGACTCCTACGTGGGACCAGTTACTCGGGACGCTCTAAGGAAATTCAGAAATCAGAAGAAGAACAAGCCTTT
GTCATTGCAAATATGTTATAGAGCAAAAGAGACATCAGATGCTGACGTGATGTCTGTAATGATGGCCGACATAGGTACAGGTGAAGAAAGAATGGCTGAACTGGAAAGAA
AAGTCAGCATGTTGATGAAGGCGGTTGAGGAGAGAGATTATGAAATTGCATCTCTGAAGAATCACATAGAAAGTCGTGATGTCGTTGAGTCAAGCCAAACACGAGCTGCA
AAGAATAATGACAAAGGGAAGACTGTCATGCAAGAAAACTAG
Protein sequenceShow/hide protein sequence
MMASKKAASKTSSDSYVGPVTRDALRKFRNQKKNKPLSLQICYRAKETSDADVMSVMMADIGTGEERMAELERKVSMLMKAVEERDYEIASLKNHIESRDVVESSQTRAA
KNNDKGKTVMQEN