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Lag0008210 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008210
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:14800772..14801131
RNA-Seq ExpressionLag0008210
SyntenyLag0008210
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034814.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-1546.61Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK-DFKSSIVA------
        PI+EESE   +P +PI LK+FFP+ F   I   V+CH  ++TE+D   S   E   K EDL    + DLL+L +E K+T+IE+LK D  S+IV+      
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK-DFKSSIVA------

Query:  -PCCRSITFTNEDLLLGS
          CC SI+F++EDLLLGS
Subjt:  -PCCRSITFTNEDLLLGS

KAA0046553.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1342.37Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAP----
        PI+E+SE   +P +PI LK+FFP+ F   I   V+CH  + TE+D       +   + EDL S  + DLL+L +E K+T+IE+LK  D  +++ +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAP----

Query:  --CCRSITFTNEDLLLGS
          CC SI+F++EDLLLGS
Subjt:  --CCRSITFTNEDLLLGS

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.2e-1344.07Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---
        PI+EESE   +P +PI LK+FFP+ F   I   V+CH  + TE+D   S   E   K EDL    + DLL+L +E K+T+IE+LK  D  + + +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---

Query:  ---CRSITFTNEDLLLGS
           C SI+F++EDLLLGS
Subjt:  ---CRSITFTNEDLLLGS

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.2e-1344.07Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---
        PI+EESE   +P +PI LK+FFP+ F   I   V+CH  + TE+D   S   E   K EDL    + DLL+L +E K+T+IE+LK  D  + + +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---

Query:  ---CRSITFTNEDLLLGS
           C SI+F++EDLLLGS
Subjt:  ---CRSITFTNEDLLLGS

TYK28705.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1342.37Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAP----
        PI+E+SE   +P +PI LK+FFP+ F   I   V+CH  + TE+D       +   + EDL S  + DLL+L +E K+T+IE+LK  D  +++ +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAP----

Query:  --CCRSITFTNEDLLLGS
          CC SI+F++EDLLLGS
Subjt:  --CCRSITFTNEDLLLGS

TrEMBL top hitse value%identityAlignment
A0A5A7SUA1 Ty3-gypsy retrotransposon protein3.0e-1546.61Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK-DFKSSIVA------
        PI+EESE   +P +PI LK+FFP+ F   I   V+CH  ++TE+D   S   E   K EDL    + DLL+L +E K+T+IE+LK D  S+IV+      
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK-DFKSSIVA------

Query:  -PCCRSITFTNEDLLLGS
          CC SI+F++EDLLLGS
Subjt:  -PCCRSITFTNEDLLLGS

A0A5A7TZU9 Ribonuclease H5.6e-1444.07Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---
        PI+EESE   +P +PI LK+FFP+ F   I   V+CH  + TE+D   S   E   K EDL    + DLL+L +E K+T+IE+LK  D  + + +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---

Query:  ---CRSITFTNEDLLLGS
           C SI+F++EDLLLGS
Subjt:  ---CRSITFTNEDLLLGS

A0A5D3BIH8 Uncharacterized protein5.6e-1444.07Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---
        PI+EESE   +P +PI LK+FFP+ F   I   V+CH  + TE+D   S   E   K EDL    + DLL+L +E K+T+IE+LK  D  + + +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---

Query:  ---CRSITFTNEDLLLGS
           C SI+F++EDLLLGS
Subjt:  ---CRSITFTNEDLLLGS

A0A5D3D1E5 Ribonuclease H5.6e-1444.07Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---
        PI+EESE   +P +PI LK+FFP+ F   I   V+CH  + TE+D   S   E   K EDL    + DLL+L +E K+T+IE+LK  D  + + +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAPC---

Query:  ---CRSITFTNEDLLLGS
           C SI+F++EDLLLGS
Subjt:  ---CRSITFTNEDLLLGS

A0A5D3DZE5 Ty3-gypsy retrotransposon protein5.6e-1442.37Show/hide
Query:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAP----
        PI+E+SE   +P +PI LK+FFP+ F   I   V+CH  + TE+D       +   + EDL S  + DLL+L +E K+T+IE+LK  D  +++ +P    
Subjt:  PILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLK--DFKSSIVAP----

Query:  --CCRSITFTNEDLLLGS
          CC SI+F++EDLLLGS
Subjt:  --CCRSITFTNEDLLLGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGTATACGAGAGGCCCAAGCCTATCTTAGAGGAAAGTGAGGAGCGTATCCAACCTCCACAACCAATCACTCTAAAAGAATTTTTCCCAAGAACTTTTCTAGC
AGGAATCGATCCAACTGTTACATGTCACGTTGTTAATGTGACAGAAGATGATAATGTCACCTCAACTGTGTCAGAAGCCATCACGAAGGTGGAAGACCTACCTTCCTTTT
GTGTAGAGGATTTACTATCGCTCCCTCAAGAGACGAAGAATACTCTAATCGAAGTGTTAAAGGATTTTAAATCATCTATTGTTGCTCCATGTTGCAGGTCCATAACTTTT
ACTAATGAAGATCTACTGCTCGGATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGTATACGAGAGGCCCAAGCCTATCTTAGAGGAAAGTGAGGAGCGTATCCAACCTCCACAACCAATCACTCTAAAAGAATTTTTCCCAAGAACTTTTCTAGC
AGGAATCGATCCAACTGTTACATGTCACGTTGTTAATGTGACAGAAGATGATAATGTCACCTCAACTGTGTCAGAAGCCATCACGAAGGTGGAAGACCTACCTTCCTTTT
GTGTAGAGGATTTACTATCGCTCCCTCAAGAGACGAAGAATACTCTAATCGAAGTGTTAAAGGATTTTAAATCATCTATTGTTGCTCCATGTTGCAGGTCCATAACTTTT
ACTAATGAAGATCTACTGCTCGGATCATAA
Protein sequenceShow/hide protein sequence
MEEVYERPKPILEESEERIQPPQPITLKEFFPRTFLAGIDPTVTCHVVNVTEDDNVTSTVSEAITKVEDLPSFCVEDLLSLPQETKNTLIEVLKDFKSSIVAPCCRSITF
TNEDLLLGS