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Lag0008234 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008234
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr9:15391324..15392159
RNA-Seq ExpressionLag0008234
SyntenyLag0008234
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041291.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-1465.22Show/hide
Query:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        C++I      LLRT +GL   E+V+VEEMVAM LHIVAHDVKNRVI+R+F RSGET+SRHFN  L VV+
Subjt:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
TYK08389.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.0e-1565.22Show/hide
Query:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        C++I      LLRT++GLVGTE+++VEEMVAM LHI+AHDVKNR+I+++FARSGETVSRHFN  L  +L
Subjt:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]6.0e-1565.22Show/hide
Query:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        C++I      LLRT++GLVGTE+++VEEMVAM LHI+AHDVKNR+I+++FARSGETVSRHFN  L  +L
Subjt:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
XP_008466673.1 PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo]3.0e-1472.88Show/hide
Query:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        LLRT +GLVGT++++VEEMVAM LHI+AHDVKNR+I+R+F RSGETVSRHFN  L  VL
Subjt:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
XP_038880502.1 uncharacterized protein LOC120072165 [Benincasa hispida]1.6e-1568.12Show/hide
Query:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        C++I     +LLRT  GLVGTE+V+VEEMVAM LHI+AHDVKNRV+RRQF +  +TVSRHFNS L+VVL
Subjt:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
TrEMBL top hitse value%identityAlignment
A0A1S3B4J8 uncharacterized protein LOC1034859522.9e-1565.22Show/hide
Query:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        C++I      LLRT++GLVGTE+++VEEMVAM LHI+AHDVKNR+I+++FARSGETVSRHFN  L  +L
Subjt:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
A0A1S3CRU3 uncharacterized protein LOC1035040271.4e-1472.88Show/hide
Query:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        LLRT +GLVGT++++VEEMVAM LHI+AHDVKNR+I+R+F RSGETVSRHFN  L  VL
Subjt:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
A0A5A7U0J9 Putative nuclease HARBI12.9e-1565.22Show/hide
Query:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        C++I      LLRT++GLVGTE+++VEEMVAM LHI+AHDVKNR+I+++FARSGETVSRHFN  L  +L
Subjt:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
A0A5D3CDG6 Putative nuclease HARBI12.9e-1565.22Show/hide
Query:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        C++I      LLRT++GLVGTE+++VEEMVAM LHI+AHDVKNR+I+++FARSGETVSRHFN  L  +L
Subjt:  CYSISRMFVSLLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
A0A5D3CQK6 Putative nuclease HARBI11.4e-1472.88Show/hide
Query:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        LLRT +GLVGT++++VEEMVAM LHI+AHDVKNR+I+R+F RSGETVSRHFN  L  VL
Subjt:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H7.6e-0552.5Show/hide
Query:  FYVVLVGLNPGIYTSWVKCHKQVNQFKGALHKSYPTFPEA
        FYVV VG   GIY++W +C +QV  F GA++KS+ T  EA
Subjt:  FYVVLVGLNPGIYTSWVKCHKQVNQFKGALHKSYPTFPEA
Q9KEI9 Ribonuclease H5.1e-0943.37Show/hide
Query:  MGISKFYVVLVGLNPGIYTSWVKCHKQVNQFKGALHKSYPTFPEAEYAFRHYVMGTRGEPNLVDQHEACRNL--PIGGYGRVG
        M  SK+YVV  G  PGIYTSW  C  QV  + GA  KSYP+  EAE AFR    G    P L  +     +L   +G  G  G
Subjt:  MGISKFYVVLVGLNPGIYTSWVKCHKQVNQFKGALHKSYPTFPEAEYAFRHYVMGTRGEPNLVDQHEACRNL--PIGGYGRVG
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.4e-0638.98Show/hide
Query:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL
        LL+T   L  T  + +E  +A+ L I+ H+++ R ++  F  SGET+SRHFN+ L+ V+
Subjt:  LLRTASGLVGTEIVNVEEMVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATATCGAAATTCTACGTCGTGCTTGTTGGTCTCAACCCAGGAATTTACACCTCGTGGGTTAAATGCCACAAACAAGTTAACCAATTTAAGGGAGCACTACACAA
GTCGTATCCAACATTTCCAGAAGCAGAGTATGCATTTAGGCATTACGTTATGGGCACCCGTGGCGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGTAACCTTCCTA
TAGGGGGATATGGTCGCGTAGGAAACTGTTATAGTATTAGTCGGATGTTCGTAAGTTTGTTGAGAACGGCTTCCGGGTTGGTAGGAACGGAAATCGTAAACGTCGAAGAG
ATGGTCGCTATGTGCTTGCATATTGTTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAATTTGCACGGTCAGGCGAAACCGTTTCTCGGCACTTCAACTCGACTTT
GAGTGTCGTACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATATCGAAATTCTACGTCGTGCTTGTTGGTCTCAACCCAGGAATTTACACCTCGTGGGTTAAATGCCACAAACAAGTTAACCAATTTAAGGGAGCACTACACAA
GTCGTATCCAACATTTCCAGAAGCAGAGTATGCATTTAGGCATTACGTTATGGGCACCCGTGGCGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGTAACCTTCCTA
TAGGGGGATATGGTCGCGTAGGAAACTGTTATAGTATTAGTCGGATGTTCGTAAGTTTGTTGAGAACGGCTTCCGGGTTGGTAGGAACGGAAATCGTAAACGTCGAAGAG
ATGGTCGCTATGTGCTTGCATATTGTTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAATTTGCACGGTCAGGCGAAACCGTTTCTCGGCACTTCAACTCGACTTT
GAGTGTCGTACTATGA
Protein sequenceShow/hide protein sequence
MGISKFYVVLVGLNPGIYTSWVKCHKQVNQFKGALHKSYPTFPEAEYAFRHYVMGTRGEPNLVDQHEACRNLPIGGYGRVGNCYSISRMFVSLLRTASGLVGTEIVNVEE
MVAMCLHIVAHDVKNRVIRRQFARSGETVSRHFNSTLSVVL