CuGenDBv2

Gene ID	Lag0008285
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:16650833..16651513
RNA-Seq Expression	Lag0008285
Synteny	Lag0008285
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

4.0e-55

56.52

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDF+LW+KK+RA+LVQ KVAK LDE +  P+++++ +  +M E+AY TI+LYL+D VLR ++E TT  ++W KL+ +YLTKSL NK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE+Y E+K AI+YG DSL M+IV++AL+++ LE KK   KD E    +G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

KAA0050070.1 putative polyprotein [Cucumis melo var. makuwa]

4.7e-56

56.52

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDF+LW+KK+RA+LVQ KVAK LDE +  PE++++ +  +M E+ YSTI+LYL+D VLR ++E TT+ ++W KL+ +Y+ KSLSNK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE Y E+K AI+YGRDSLNM+I+++AL+++ LE KK   KD E    +  
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.9e-57

57.97

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDFSLW+KK+RA+LVQ KVAK LDE +  P+++++ +  +M E+AYSTI+LYL+D VLR ++E TT  ++W KL+ +YLTKSL NK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE+Y E+K AI+YGRDSL M+IV++AL+++ LE KK   KD E    +G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

PON64464.1 hypothetical protein TorRG33x02_273130 [Trema orientale]

4.7e-56

53.57

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        T+K E+E+FDGKGDF++WKKKM+A+LVQQK AK L ++   PE+M   +  E+ E AYS +IL LADNVLRQ++EQ T  KVW+KLD +YLTK+LSNK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        LKE+ FGFKMD +K LE NL +F +IT+ LANI E +NDEN++II+LNSLPESY ++K+ I+YGR+SL+++ V+ ALRS +LE K     + E   V+G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTKPNNSRGNPNLAEGGSKS
         +K++   +  RG       G K+
Subjt:  PEKKNTKPNNSRGNPNLAEGGSKS

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.3e-57

57.49

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDF+LW+KK+RA+LVQ KVAK LDE +  P+++++ +  +M E+AYSTI+LYL+D VLR ++E TT  ++W KL+ +YLTKSL NK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE+Y E+K AI+YGRDSL M+IV++AL+++ LE KK   KD E    +G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

TrEMBL top hits

e value

%identity

Alignment

A0A2P5CTT8 Uncharacterized protein

2.3e-56

53.57

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        T+K E+E+FDGKGDF++WKKKM+A+LVQQK AK L ++   PE+M   +  E+ E AYS +IL LADNVLRQ++EQ T  KVW+KLD +YLTK+LSNK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        LKE+ FGFKMD +K LE NL +F +IT+ LANI E +NDEN++II+LNSLPESY ++K+ I+YGR+SL+++ V+ ALRS +LE K     + E   V+G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTKPNNSRGNPNLAEGGSKS
         +K++   +  RG       G K+
Subjt:  PEKKNTKPNNSRGNPNLAEGGSKS

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

1.9e-55

56.52

Show/hide

Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDF+LW+KK+RA+LVQ KVAK LDE +  P+++++ +  +M E+AY TI+LYL+D VLR ++E TT  ++W KL+ +YLTKSL NK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE+Y E+K AI+YG DSL M+IV++AL+++ LE KK   KD E    +G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

A0A5A7U459 Putative polyprotein

2.3e-56

56.52

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDF+LW+KK+RA+LVQ KVAK LDE +  PE++++ +  +M E+ YSTI+LYL+D VLR ++E TT+ ++W KL+ +Y+ KSLSNK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE Y E+K AI+YGRDSLNM+I+++AL+++ LE KK   KD E    +  
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

A0A5A7UB25 Putative gag-pol polyprotein

9.2e-58

57.97

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDFSLW+KK+RA+LVQ KVAK LDE +  P+++++ +  +M E+AYSTI+LYL+D VLR ++E TT  ++W KL+ +YLTKSL NK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE+Y E+K AI+YGRDSL M+IV++AL+++ LE KK   KD E    +G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

A0A5D3DNU1 Putative gag-pol polyprotein

1.6e-57

57.49

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Query:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY
        +T+FEV +F+G GDF+LW+KK+RA+LVQ KVAK LDE +  P+++++ +  +M E+AYSTI+LYL+D VLR ++E TT  ++W KL+ +YLTKSL NK+Y
Subjt:  TTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLY

Query:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE
        +KEKFFG+KMD SK LE+NL EF KI +DL NIGE ++DEN+++ILLNSLPE+Y E+K AI+YGRDSL M+IV++AL+++ LE KK   KD E    +G 
Subjt:  LKEKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGE

Query:  PEKKNTK
         EKK+ K
Subjt:  PEKKNTK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.9e-12

28.71

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Query:  KFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLYLK
        K  ++ FDG+  +++WK ++RALL +Q V K +D     P  + D+   + +  A STII YL+D+ L       T +++   LD +Y  KSL+++L L+
Subjt:  KFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLYLK

Query:  EKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIR-YGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGEP
        ++    K+     L  + + F+++  +L   G  + + +K   LL +LP  Y+ I  AI     ++L +  V N L  +E++ K   N  S+        
Subjt:  EKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIR-YGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGEP

Query:  EKKNTKPNN
           NT  NN
Subjt:  EKKNTKPNN

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.4e-31

35.58

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Query:  KFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLYLK
        K+EV +F+G   FS W+++MR LL+QQ + K LD    KP++M  E  A++ E A S I L+L+D+V+  + ++ T + +W +L+ +Y++K+L+NKLYLK
Subjt:  KFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLYLK

Query:  EKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGEPE
        ++ +   M    +   +L  FN +   LAN+G  + +E+K+I+LLNSLP SY+ +   I +G+ ++ +  V +AL   E   KK  N+  +A   +G   
Subjt:  EKFFGFKMDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGEPE

Query:  KKNTKPNN
              NN
Subjt:  KKNTKPNN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACTACCAAATTCGAAGTGGAGAGGTTTGATGGAAAGGGGGACTTCTCTCTATGGAAGAAAAAGATGAGAGCACTTTTGGTGCAACAAAAGGTGGCCAAAGCCCTCGA
TGAATCCGATGATAAACCAGAAAGCATGAGTGATGAGCAGTGTGCTGAGATGAAGGAAATCGCTTACAGCACCATCATTCTCTACCTTGCAGACAACGTATTAAGGCAAT
TGAATGAGCAAACAACTGTGAAAAAGGTATGGGCTAAATTAGATGAGATATACCTTACTAAATCACTCTCGAACAAGCTATACCTTAAGGAAAAATTCTTCGGATTTAAA
ATGGACATCTCAAAAGACTTGGAACAAAATTTGTATGAGTTTAATAAGATAACCATCGATCTTGCCAACATAGGAGAATTTGTGAATGATGAAAATAAGTCTATTATTCT
GCTCAATTCCCTTCCCGAATCTTACAATGAGATTAAAAATGCGATAAGATATGGTAGGGATAGTCTCAATATGAATATTGTTGTTAATGCTTTACGGTCCAAAGAGTTAG
AGGCCAAGAAAACTATTAACAAAGATAGTGAGGCACATTTTGTAAAGGGCGAACCTGAAAAGAAAAACACCAAACCAAATAACTCAAGAGGAAATCCGAATCTAGCAGAG
GGAGGATCGAAATCACAATGA

mRNA sequence

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Protein sequence

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MTTKFEVERFDGKGDFSLWKKKMRALLVQQKVAKALDESDDKPESMSDEQCAEMKEIAYSTIILYLADNVLRQLNEQTTVKKVWAKLDEIYLTKSLSNKLYLKEKFFGFK
MDISKDLEQNLYEFNKITIDLANIGEFVNDENKSIILLNSLPESYNEIKNAIRYGRDSLNMNIVVNALRSKELEAKKTINKDSEAHFVKGEPEKKNTKPNNSRGNPNLAE
GGSKSQ

Lag0008285 (gene) of Sponge gourd (AG-4) v1 genome