; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008294 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008294
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr9:16895137..16895817
RNA-Seq ExpressionLag0008294
SyntenyLag0008294
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-2763.73Show/hide
Query:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI
        +TN G  G++FCQI  K  H ALDCYN M FSYQG +PP+QLAAM VNSMNSQ S +N+N FWL  SGCN+H  N+LANLNL NNYNGEE VTV + Q +
Subjt:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI

Query:  GM
         +
Subjt:  GM

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2661.39Show/hide
Query:  SDTNMGGQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNIG
        +++   G++FCQI  K  H ALDCYN M FSYQ  + P+QLAAM VNSMNSQ S++N+N FWLS SG N+H  N+LANLNL NNYNGEE VTVG+GQ + 
Subjt:  SDTNMGGQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNIG

Query:  M
        +
Subjt:  M

TYK01753.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.0e-1565.15Show/hide
Query:  MKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTV
        M FSYQG +PP+QLA MVVNSM+SQ+S +N+N  W S SGCN+H   +L NLNL NNYNG+E VTV
Subjt:  MKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTV

TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-2763.73Show/hide
Query:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI
        +TN G  G++FCQI  K  H ALDCYN M FSYQG +PP+QLAAM VNSMNSQ S +N+N FWL  SGCN+H  N+LANLNL NNYNGEE VTV + Q +
Subjt:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI

Query:  GM
         +
Subjt:  GM

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]4.6e-2763.73Show/hide
Query:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI
        +TN G  G++FCQI  K  H ALDCYN M FSYQG +PP+QL AM +NSMNSQ   +N+N F LS SGCN+H  N+LANLNL NNYNGEE VTVG+GQ I
Subjt:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI

Query:  GM
         +
Subjt:  GM

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918252.2e-2763.73Show/hide
Query:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI
        +TN G  G++FCQI  K  H ALDCYN M FSYQG +PP+QL AM +NSMNSQ   +N+N F LS SGCN+H  N+LANLNL NNYNGEE VTVG+GQ I
Subjt:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI

Query:  GM
         +
Subjt:  GM

A0A5A7U7J4 Putative mitochondrial protein7.6e-2863.73Show/hide
Query:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI
        +TN G  G++FCQI  K  H ALDCYN M FSYQG +PP+QLAAM VNSMNSQ S +N+N FWL  SGCN+H  N+LANLNL NNYNGEE VTV + Q +
Subjt:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI

Query:  GM
         +
Subjt:  GM

A0A5A7VGG0 Retrotransposon protein8.4e-2761.39Show/hide
Query:  SDTNMGGQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNIG
        +++   G++FCQI  K  H ALDCYN M FSYQ  + P+QLAAM VNSMNSQ S++N+N FWLS SG N+H  N+LANLNL NNYNGEE VTVG+GQ + 
Subjt:  SDTNMGGQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNIG

Query:  M
        +
Subjt:  M

A0A5D3BPY5 Putative mitochondrial protein4.3e-1565.15Show/hide
Query:  MKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTV
        M FSYQG +PP+QLA MVVNSM+SQ+S +N+N  W S SGCN+H   +L NLNL NNYNG+E VTV
Subjt:  MKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTV

A0A5D3C579 Putative mitochondrial protein7.6e-2863.73Show/hide
Query:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI
        +TN G  G++FCQI  K  H ALDCYN M FSYQG +PP+QLAAM VNSMNSQ S +N+N FWL  SGCN+H  N+LANLNL NNYNGEE VTV + Q +
Subjt:  DTNMG--GQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNI

Query:  GM
         +
Subjt:  GM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGAGAAAACTCTTCAACGAAATGTGCCCATTGATCCCATTTCTACCTCCATGGTTGCTGCTATTGCAAGGAACTTCTCGAACCCTAATACTTGAGGAAGACGT
AGACAAAAATTTTTACGTGGTCGTGGACAAAATCAATTCCCATCCTCGCGCGACCCAAACCCATTCTTCACCAAAGCTAGTGGCTCAACGAATCAATTTTCATGTGGTAT
CTTGGGTTTTGGTTGGGGTTAATTCAAGGGTCACACTGACGAATCTGCACAATTCGGGTCTTGAATGCAATTTGGGTCTGAAATGCCATCTTTTGGATCTGGACACACTA
ATATTGGAATATGCTTCTTCAGATACCAATATGGGAGGTCAAATGTTTTGTCAAATACGCTCAAAACCTAGTCATGAAGCCCTTGATTGCTACAATTGGATGAAATTTTC
TTATCAGGGTCATAATCCACCAACTCAATTGGCTGCAATGGTGGTAAATTCTATGAATTCACAATCTTCGAATGATAATAGTAATACCTTCTGGTTATCTAAAAGTGGCT
GCAATATTCATACAAAAAATGACCTGGCAAATCTTAATCTCCCCAACAACTACAACGGAGAAGAATATGTCACAGTGGGTAGTGGCCAAAATATAGGAATGTTGGCTTTT
TGGCCCTTAATCTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGAGAAAACTCTTCAACGAAATGTGCCCATTGATCCCATTTCTACCTCCATGGTTGCTGCTATTGCAAGGAACTTCTCGAACCCTAATACTTGAGGAAGACGT
AGACAAAAATTTTTACGTGGTCGTGGACAAAATCAATTCCCATCCTCGCGCGACCCAAACCCATTCTTCACCAAAGCTAGTGGCTCAACGAATCAATTTTCATGTGGTAT
CTTGGGTTTTGGTTGGGGTTAATTCAAGGGTCACACTGACGAATCTGCACAATTCGGGTCTTGAATGCAATTTGGGTCTGAAATGCCATCTTTTGGATCTGGACACACTA
ATATTGGAATATGCTTCTTCAGATACCAATATGGGAGGTCAAATGTTTTGTCAAATACGCTCAAAACCTAGTCATGAAGCCCTTGATTGCTACAATTGGATGAAATTTTC
TTATCAGGGTCATAATCCACCAACTCAATTGGCTGCAATGGTGGTAAATTCTATGAATTCACAATCTTCGAATGATAATAGTAATACCTTCTGGTTATCTAAAAGTGGCT
GCAATATTCATACAAAAAATGACCTGGCAAATCTTAATCTCCCCAACAACTACAACGGAGAAGAATATGTCACAGTGGGTAGTGGCCAAAATATAGGAATGTTGGCTTTT
TGGCCCTTAATCTCAAATTAA
Protein sequenceShow/hide protein sequence
MLKRKLFNEMCPLIPFLPPWLLLLQGTSRTLILEEDVDKNFYVVVDKINSHPRATQTHSSPKLVAQRINFHVVSWVLVGVNSRVTLTNLHNSGLECNLGLKCHLLDLDTL
ILEYASSDTNMGGQMFCQIRSKPSHEALDCYNWMKFSYQGHNPPTQLAAMVVNSMNSQSSNDNSNTFWLSKSGCNIHTKNDLANLNLPNNYNGEEYVTVGSGQNIGMLAF
WPLISN