CuGenDBv2

Gene ID	Lag0008416
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:20984520..20986194
RNA-Seq Expression	Lag0008416
Synteny	Lag0008416
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]

2.8e-19

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Query:  EGHELEEHISEDCQPP-------PEKIQVSEGTSTVIKP---NPNYTSWKRQDKLISSWIVGSMTESILEQVMH--------------------------
        E ++LE ++  + +PP       P +  V+ G+S+       NP Y  WKRQD+LISSW++GSM E IL Q++H                          
Subjt:  EGHELEEHISEDCQPP-------PEKIQVSEGTSTVIKP---NPNYTSWKRQDKLISSWIVGSMTESILEQVMH--------------------------

Query:  ----------------------------SAIRKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLT
                                    ++I K +  +DHI+YILAGLG EY++M+SVI+A+T S +VQDV++L+LT ES+IESK  I ++  LPT N+T
Subjt:  ----------------------------SAIRKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLT

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.8e-29

30.67

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP
        N+E SS   + Q    GNKIS VKL ++ FLL KFQ+                          TALE ++LE  +  + +PP + +  +E +S      P
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP

Query:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM
        NP Y  WKRQD+LISSW++GSM+E IL Q++H                                                      ++I K V  +DHI+
Subjt:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM

Query:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER
        YILAGLG++Y++M+SVI+A+T S +VQ+V++L+LT ES+ ESK  + ++  LP+ N+  Q  T+K  E        N  N     Q+   GNGR     R
Subjt:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER

Query:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN
         N +K                     P +  + ++P+S    + +  N  QM                    ATNHLT++  N+S+ SEY G NQI+  N
Subjt:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN

Query:  G
        G
Subjt:  G

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

4.1e-18

32.6

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI---K
        N+E SS   + Q     NKIS VKL+++NFLL KFQ+                          TALE ++LE  +  + + PP K  +S G+S+      
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI---K

Query:  PNPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHI
        PNP Y  WKRQD+LISSW++GSM+E IL Q++H                                                      ++I K V  +DHI
Subjt:  PNPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHI

Query:  MYILAGLGAEYETMVSVITAKTGSQTV
        +YILAGLG++Y++M+SVI  +T S +V
Subjt:  MYILAGLGAEYETMVSVITAKTGSQTV

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.8e-29

30.67

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP
        N+E SS   + Q    GNKIS VKL ++ FLL KFQ+                          TALE ++LE  +  + +PP + +  +E +S      P
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP

Query:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM
        NP Y  WKRQD+LISSW++GSM+E IL Q++H                                                      ++I K V  +DHI+
Subjt:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM

Query:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER
        YILAGLG++Y++M+SVI+A+T S +VQ+V++L+LT ES+ ESK  + ++  LP+ N+  Q  T+K  E        N  N     Q+   GNGR     R
Subjt:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER

Query:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN
         N +K                     P +  + ++P+S    + +  N  QM                    ATNHLT++  N+S+ SEY G NQI+  N
Subjt:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN

Query:  G
        G
Subjt:  G

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]

4.2e-23

27.05

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVS--EGTSTVIKP
        NS+ +   Q ++ IN G+K+S V+L ++N LL KFQ+                          TAL+G+ LE +I  +   P + +Q +  E +S+ ++ 
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVS--EGTSTVIKP

Query:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM
        NP Y  W +QDKLIS+W++GSM E IL Q++                                                       +   K +  EDHIM
Subjt:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM

Query:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTENLRNVSQSQQQQSFGNGRGRERFNSSK-----
        +ILAGLG E++ ++SVITA+   QT+Q+V +L+L  E R E ++ IN+DG LP+ NLT+ + ++K+  +        Q      GRG    +S++     
Subjt:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTENLRNVSQSQQQQSFGNGRGRERFNSSK-----

Query:  -------------------------------------MPGAYLTQF---NPSSQFFSG---QNS---------GQM--------------------ATNH
                                              P  + + F    PS   FS    QN           QM                     TNH
Subjt:  -------------------------------------MPGAYLTQF---NPSSQFFSG---QNS---------GQM--------------------ATNH

Query:  LTNNFGNMSVSSEYLGNNQIHVGN--GLSNWASTSPWDST
        +TN FGN S+ SEY G+ +I VGN  G  NW + S  +S+
Subjt:  LTNNFGNMSVSSEYLGNNQIHVGN--GLSNWASTSPWDST

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUB3 Putative glutathione S-transferase isoform X1

1.4e-19

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Query:  EGHELEEHISEDCQPP-------PEKIQVSEGTSTVIKP---NPNYTSWKRQDKLISSWIVGSMTESILEQVMH--------------------------
        E ++LE ++  + +PP       P +  V+ G+S+       NP Y  WKRQD+LISSW++GSM E IL Q++H                          
Subjt:  EGHELEEHISEDCQPP-------PEKIQVSEGTSTVIKP---NPNYTSWKRQDKLISSWIVGSMTESILEQVMH--------------------------

Query:  ----------------------------SAIRKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLT
                                    ++I K +  +DHI+YILAGLG EY++M+SVI+A+T S +VQDV++L+LT ES+IESK  I ++  LPT N+T
Subjt:  ----------------------------SAIRKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLT

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.3e-29

30.67

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP
        N+E SS   + Q    GNKIS VKL ++ FLL KFQ+                          TALE ++LE  +  + +PP + +  +E +S      P
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP

Query:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM
        NP Y  WKRQD+LISSW++GSM+E IL Q++H                                                      ++I K V  +DHI+
Subjt:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM

Query:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER
        YILAGLG++Y++M+SVI+A+T S +VQ+V++L+LT ES+ ESK  + ++  LP+ N+  Q  T+K  E        N  N     Q+   GNGR     R
Subjt:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER

Query:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN
         N +K                     P +  + ++P+S    + +  N  QM                    ATNHLT++  N+S+ SEY G NQI+  N
Subjt:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN

Query:  G
        G
Subjt:  G

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

2.0e-18

32.6

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI---K
        N+E SS   + Q     NKIS VKL+++NFLL KFQ+                          TALE ++LE  +  + + PP K  +S G+S+      
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI---K

Query:  PNPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHI
        PNP Y  WKRQD+LISSW++GSM+E IL Q++H                                                      ++I K V  +DHI
Subjt:  PNPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHI

Query:  MYILAGLGAEYETMVSVITAKTGSQTV
        +YILAGLG++Y++M+SVI  +T S +V
Subjt:  MYILAGLGAEYETMVSVITAKTGSQTV

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.3e-29

30.67

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP
        N+E SS   + Q    GNKIS VKL ++ FLL KFQ+                          TALE ++LE  +  + +PP + +  +E +S      P
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVI--KP

Query:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM
        NP Y  WKRQD+LISSW++GSM+E IL Q++H                                                      ++I K V  +DHI+
Subjt:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM

Query:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER
        YILAGLG++Y++M+SVI+A+T S +VQ+V++L+LT ES+ ESK  + ++  LP+ N+  Q  T+K  E        N  N     Q+   GNGR     R
Subjt:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTE--------NLRNVSQSQQQQSFGNGRGR--ER

Query:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN
         N +K                     P +  + ++P+S    + +  N  QM                    ATNHLT++  N+S+ SEY G NQI+  N
Subjt:  FNSSK--------------------MPGAYLTQFNPSS---QFFSGQNSGQM--------------------ATNHLTNNFGNMSVSSEYLGNNQIHVGN

Query:  G
        G
Subjt:  G

A0A6J1DLT9 uncharacterized protein LOC111021757

2.0e-23

27.05

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Query:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVS--EGTSTVIKP
        NS+ +   Q ++ IN G+K+S V+L ++N LL KFQ+                          TAL+G+ LE +I  +   P + +Q +  E +S+ ++ 
Subjt:  NSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVS--EGTSTVIKP

Query:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM
        NP Y  W +QDKLIS+W++GSM E IL Q++                                                       +   K +  EDHIM
Subjt:  NPNYTSWKRQDKLISSWIVGSMTESILEQVMH------------------------------------------------------SAIRKTVPVEDHIM

Query:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTENLRNVSQSQQQQSFGNGRGRERFNSSK-----
        +ILAGLG E++ ++SVITA+   QT+Q+V +L+L  E R E ++ IN+DG LP+ NLT+ + ++K+  +        Q      GRG    +S++     
Subjt:  YILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTENLRNVSQSQQQQSFGNGRGRERFNSSK-----

Query:  -------------------------------------MPGAYLTQF---NPSSQFFSG---QNS---------GQM--------------------ATNH
                                              P  + + F    PS   FS    QN           QM                     TNH
Subjt:  -------------------------------------MPGAYLTQF---NPSSQFFSG---QNS---------GQM--------------------ATNH

Query:  LTNNFGNMSVSSEYLGNNQIHVGN--GLSNWASTSPWDST
        +TN FGN S+ SEY G+ +I VGN  G  NW + S  +S+
Subjt:  LTNNFGNMSVSSEYLGNNQIHVGN--GLSNWASTSPWDST

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

7.8e-04

22.29

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Query:  EGHELEEHISEDCQPPPEKIQVSEGTSTVIKPNPNYTSWKRQDKLISSWIVGSMTESILEQVMHSA----------------------------------
        +G+EL   +      PP  I    GT    + NP+YT WKRQDKLI S ++G+++ S+   V  +                                   
Subjt:  EGHELEEHISEDCQPPPEKIQVSEGTSTVIKPNPNYTSWKRQDKLISSWIVGSMTESILEQVMHSA----------------------------------

Query:  --------------------IRKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSS-----INADGVLPTTNLTIQN--
                            + K +  ++ +  +L  L  EY+ ++  I AK    T+ ++   +L HES+I + SS     I A+ V      T  N  
Subjt:  --------------------IRKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSS-----INADGVLPTTNLTIQN--

Query:  ----PTQKDTENLRNVSQSQQQQSFG--------------------NGRGRERFN---------SSKMPGAYLTQFNPSSQFFSGQ---------NSGQM
              + D  N  N S+  QQ S                       G   +R +         +S+ P +  T + P +    G          +SG  
Subjt:  ----PTQKDTENLRNVSQSQQQQSFG--------------------NGRGRERFN---------SSKMPGAYLTQFNPSSQFFSGQ---------NSGQM

Query:  ATNHLTNNFGNMSVSSEYLGNNQIHVGNG----LSNWASTS
        AT+H+T++F N+S+   Y G + + V +G    +S+  STS
Subjt:  ATNHLTNNFGNMSVSSEYLGNNQIHVGNG----LSNWASTS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATTTTTCAGAGACGAACTCTGAAATTTCAAGTGGAAATCAAGTCACTCAAGCAATTAATCATGGAAACAAGATCTCAACGGTAAAGCTAACTGAGGAAAATTTCCT
ACTTTGCAAATTTCAAGTTTCACGGCGCTCGAAGGACATGAATTGGAAGAGCATATCAGTGAAGATTGCCAACCTCCTCCAGAGAAAATCCAATTTCACGGCGCTCGAAG
GACATGAATTGGAAGAGCATATCAGTGAAGATTGCCAACCTCCTCCAGAGAAAATCCAAGTAAGTGAAGGTACCTCCACTGTGATTAAACCTAACCCTAATTATACGTCA
TGGAAGAGGCAGGATAAACTAATATCTTCTTGGATTGTTGGTTCAATGACTGAGTCTATTCTTGAACAAGTGATGCACTCTGCCATAAGGAAAACTGTACCAGTTGAAGA
TCATATTATGTATATCCTAGCTGGTCTTGGTGCAGAATATGAAACTATGGTTTCAGTGATTACTGCCAAAACAGGGTCACAAACTGTTCAAGATGTTATTGCATTGATTT
TAACACATGAAAGTAGGATAGAAAGCAAATCTTCTATTAATGCTGATGGAGTCTTACCTACCACTAATCTCACAATTCAAAATCCTACACAAAAAGATACAGAAAATTTG
AGAAATGTGAGTCAGTCGCAACAACAACAAAGTTTCGGTAATGGTAGAGGCAGAGAAAGATTTAATTCTAGTAAGATGCCTGGGGCTTACTTGACTCAATTCAACCCTTC
TAGTCAGTTTTTTTCTGGACAGAATTCTGGTCAGATGGCTACCAATCACTTAACAAATAACTTTGGGAACATGTCTGTCAGCTCAGAGTATCTTGGAAACAATCAAATTC
ATGTGGGCAATGGACTAAGCAACTGGGCGAGTACTTCTCCATGGGACTCTACATGA

mRNA sequence

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Protein sequence

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MDFSETNSEISSGNQVTQAINHGNKISTVKLTEENFLLCKFQVSRRSKDMNWKSISVKIANLLQRKSNFTALEGHELEEHISEDCQPPPEKIQVSEGTSTVIKPNPNYTS
WKRQDKLISSWIVGSMTESILEQVMHSAIRKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALILTHESRIESKSSINADGVLPTTNLTIQNPTQKDTENL
RNVSQSQQQQSFGNGRGRERFNSSKMPGAYLTQFNPSSQFFSGQNSGQMATNHLTNNFGNMSVSSEYLGNNQIHVGNGLSNWASTSPWDST

Lag0008416 (gene) of Sponge gourd (AG-4) v1 genome