; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008422 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008422
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr9:21153443..21154024
RNA-Seq ExpressionLag0008422
SyntenyLag0008422
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.9e-5354.4Show/hide
Query:  MRRNKVVNLFPLDLEIDRTLRSIRREKRLAEAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHLRSFLE
        MRR +  ++ P+D EI+RTLRS+RR K LA A   +E  P+ ++D+++PV+      I+  PI A NFELK  LI M     F G P +DP+ HL  FLE
Subjt:  MRRNKVVNLFPLDLEIDRTLRSIRREKRLAEAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHLRSFLE

Query:  ICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP
        IC TVK+NGV  D IRLRLFPFSL+DKA+ WL+S++ GSI +W ++A+ FL KFFP AKT +LR+EIG  +Q D E LYEAWERYK+++RRCP
Subjt:  ICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP

RWR83368.1 hypothetical protein CKAN_01212200 [Cinnamomum micranthum f. kanehirae]9.0e-4851.27Show/hide
Query:  MRRNKVVNLFPLDLEIDRTLRSIRREKRLA---EAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQM-AHDNSFMGHPSEDPHSHLR
        MRRN+ +NL PLD EI+RTLR +++EK+     E    +E+A +++ D+  P++      I    IQA NFE+K  +IQM A    F G P +DP++H+ 
Subjt:  MRRNKVVNLFPLDLEIDRTLRSIRREKRLA---EAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQM-AHDNSFMGHPSEDPHSHLR

Query:  SFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP
        +FLE+C T K NGV  DA+RLRL PFSL+DKAK WL S+   +I+TWDELA+ FL KFFP  KT K+R +I T  Q + E LYEAWERYKE+LR+CP
Subjt:  SFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.7e-6266.67Show/hide
Query:  NLFPLDLEIDRTLRSIRREKRLAEAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHLRSFLEICGTVKM
        NL PLD EIDRT R   R   L +     EE PKAIRD+ QP LP    GI+  PI   NFELK GLIQMA + +F G  +EDPH HLRSFLEICGTVKM
Subjt:  NLFPLDLEIDRTLRSIRREKRLAEAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHLRSFLEICGTVKM

Query:  NGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP
        NGV  DAI+LRLFPFSLQD+AKDWLE+I   SI+TW+ LAQAFL K+FP AK+ +LRTEIGT RQL++EQLYEAWERYK++LRRCP
Subjt:  NGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP

XP_021279280.1 LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 [Herrania umbratica]7.6e-4750.95Show/hide
Query:  MRRNKVVNLFPLDLEIDRTLRSIRREK----RLAEAMAHQE------------EAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDN-SF
        M+R   +NL P D +I+RT R  RRE      L + MA               EA +A+RD++ P++   +  I    I A NFE+K   IQM   +  F
Subjt:  MRRNKVVNLFPLDLEIDRTLRSIRREK----RLAEAMAHQE------------EAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDN-SF

Query:  MGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWE
         G PS+DP+SHL +FLEIC T K NGV  DAIRLRLFPFSL+DKAK WL S+  GSI+TW++LAQ FL KFFP AKT K+R +I +  Q D E LYEAWE
Subjt:  MGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWE

Query:  RYKEILRRCP
        R+KE+LRRCP
Subjt:  RYKEILRRCP

XP_022843226.1 uncharacterized protein LOC111366761 [Olea europaea var. sylvestris]1.6e-4954.23Show/hide
Query:  MRRNKVVNLFPLDLEIDRT---LRSIRREKRLAEA-----MAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPH
        MRR + ++L  +D E +RT   LR I+R +R A A      A+++   +AIRD+++PV+     GI    I A NFELK GLI M   N F G   EDP+
Subjt:  MRRNKVVNLFPLDLEIDRT---LRSIRREKRLAEA-----MAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPH

Query:  SHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRC
        +HL SFLEIC TVKMNGV  DAIRLRLF FSL+DKAK W +S+  GSI+TWD+LAQ FLTK+FP +K+ +LR EI   +QLD E  YEAWER+K++LRRC
Subjt:  SHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRC

Query:  P
        P
Subjt:  P

TrEMBL top hitse value%identityAlignment
A0A1S3UKD4 uncharacterized protein LOC1067662671.7e-4450.51Show/hide
Query:  DLEIDRTLRSIR-------REKRLAEAMAHQEEAP----------KAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHL
        D  I+RT RS R       RE+R  +    QEE            K IRD+  P        IV  PIQA NFE+K  L+Q+   N F G  SEDP+SHL
Subjt:  DLEIDRTLRSIR-------REKRLAEAMAHQEEAP----------KAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHL

Query:  RSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP
         +FL IC T+K NGV  DAI LRLFPFSL+DKAK+WL+S+  GSISTW+++A  F+TK+FP +K+ K+R EI +  Q D E LYEAWERYKE++R+CP
Subjt:  RSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP

A0A3S3N117 Retrotrans_gag domain-containing protein4.3e-4851.27Show/hide
Query:  MRRNKVVNLFPLDLEIDRTLRSIRREKRLA---EAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQM-AHDNSFMGHPSEDPHSHLR
        MRRN+ +NL PLD EI+RTLR +++EK+     E    +E+A +++ D+  P++      I    IQA NFE+K  +IQM A    F G P +DP++H+ 
Subjt:  MRRNKVVNLFPLDLEIDRTLRSIRREKRLA---EAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQM-AHDNSFMGHPSEDPHSHLR

Query:  SFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP
        +FLE+C T K NGV  DA+RLRL PFSL+DKAK WL S+   +I+TWDELA+ FL KFFP  KT K+R +I T  Q + E LYEAWERYKE+LR+CP
Subjt:  SFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129453.7e-4750.95Show/hide
Query:  MRRNKVVNLFPLDLEIDRTLRSIRREK----RLAEAMAHQE------------EAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDN-SF
        M+R   +NL P D +I+RT R  RRE      L + MA               EA +A+RD++ P++   +  I    I A NFE+K   IQM   +  F
Subjt:  MRRNKVVNLFPLDLEIDRTLRSIRREK----RLAEAMAHQE------------EAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDN-SF

Query:  MGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWE
         G PS+DP+SHL +FLEIC T K NGV  DAIRLRLFPFSL+DKAK WL S+  GSI+TW++LAQ FL KFFP AKT K+R +I +  Q D E LYEAWE
Subjt:  MGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWE

Query:  RYKEILRRCP
        R+KE+LRRCP
Subjt:  RYKEILRRCP

A0A6J0ZYV0 uncharacterized protein LOC1104134136.3e-4750.95Show/hide
Query:  MRRNKVVNLFPLDLEIDRTLRSIRREK----RLAEAMAHQE------------EAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDN-SF
        M+R   +NL P D +I+RT R  RRE      L + MA               EA +A+RD+  P++   +  I    I A NFE+K   IQM   +  F
Subjt:  MRRNKVVNLFPLDLEIDRTLRSIRREK----RLAEAMAHQE------------EAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDN-SF

Query:  MGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWE
         G PS+DP+SHL +FLEIC T K NGV  DAIRLRLFPFSL+DKAK WL S+  GSI+TW++LAQ FL KFFP AKT K+R +I +  Q D E LYEAWE
Subjt:  MGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWE

Query:  RYKEILRRCP
        R+KE+LRRCP
Subjt:  RYKEILRRCP

A0A7C9A3K2 Retrotrans_gag domain-containing protein (Fragment)2.5e-4349.47Show/hide
Query:  LFPLDLEIDRTLR---SIRREKRLAEAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHLRSFLEICGTV
        L P D EI+   R   S  R KR AEA   Q+   + +RD++ P        IV   ++A NFEL   LI       F GHPSE+P++H+R FL  C T+
Subjt:  LFPLDLEIDRTLR---SIRREKRLAEAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHLRSFLEICGTV

Query:  KMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP
        K+NG  +DAIRLRLFPFSL+D+A DWL++ E  S +TWD L++AFL+K+FP  KT KLR EI +  Q D E LYEAWERYK++ R+CP
Subjt:  KMNGVPADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGGAACAAGGTGGTTAATTTGTTTCCGCTAGATCTTGAAATTGACAGGACTCTTAGATCTATTCGAAGAGAGAAAAGATTAGCAGAAGCAATGGCCCATCAAGA
GGAAGCTCCCAAGGCAATTAGAGATTTCTTACAGCCAGTTCTTCCCACCGAGAATTGTGGAATTGTCTACGCCCCAATCCAAGCTACAAATTTTGAGTTAAAGACAGGAT
TGATTCAGATGGCGCACGATAACTCGTTTATGGGACATCCTTCCGAGGACCCCCATTCACATCTGCGATCATTTCTAGAAATTTGTGGGACGGTGAAGATGAACGGAGTT
CCGGCAGACGCGATAAGATTGAGGTTGTTTCCATTTTCTCTACAAGATAAAGCAAAGGATTGGCTCGAATCAATCGAGACGGGCAGCATTAGTACTTGGGACGAGCTTGC
CCAGGCTTTTCTGACGAAATTTTTCCCGTCTGCCAAGACTACCAAGCTTCGGACTGAGATCGGAACGTTGAGGCAGCTTGACGAGGAGCAGTTGTACGAGGCGTGGGAGA
GATACAAAGAAATTCTTAGGCGGTGTCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAAGGAACAAGGTGGTTAATTTGTTTCCGCTAGATCTTGAAATTGACAGGACTCTTAGATCTATTCGAAGAGAGAAAAGATTAGCAGAAGCAATGGCCCATCAAGA
GGAAGCTCCCAAGGCAATTAGAGATTTCTTACAGCCAGTTCTTCCCACCGAGAATTGTGGAATTGTCTACGCCCCAATCCAAGCTACAAATTTTGAGTTAAAGACAGGAT
TGATTCAGATGGCGCACGATAACTCGTTTATGGGACATCCTTCCGAGGACCCCCATTCACATCTGCGATCATTTCTAGAAATTTGTGGGACGGTGAAGATGAACGGAGTT
CCGGCAGACGCGATAAGATTGAGGTTGTTTCCATTTTCTCTACAAGATAAAGCAAAGGATTGGCTCGAATCAATCGAGACGGGCAGCATTAGTACTTGGGACGAGCTTGC
CCAGGCTTTTCTGACGAAATTTTTCCCGTCTGCCAAGACTACCAAGCTTCGGACTGAGATCGGAACGTTGAGGCAGCTTGACGAGGAGCAGTTGTACGAGGCGTGGGAGA
GATACAAAGAAATTCTTAGGCGGTGTCCCTAA
Protein sequenceShow/hide protein sequence
MRRNKVVNLFPLDLEIDRTLRSIRREKRLAEAMAHQEEAPKAIRDFLQPVLPTENCGIVYAPIQATNFELKTGLIQMAHDNSFMGHPSEDPHSHLRSFLEICGTVKMNGV
PADAIRLRLFPFSLQDKAKDWLESIETGSISTWDELAQAFLTKFFPSAKTTKLRTEIGTLRQLDEEQLYEAWERYKEILRRCP