CuGenDBv2

Gene ID	Lag0008425
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr9:21251086..21251487
RNA-Seq Expression	Lag0008425
Synteny	Lag0008425
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.9e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.9e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.9e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]

4.9e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]

4.9e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

2.4e-61

87.97

Show/hide

Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

A0A5A7U2V7 Reverse transcriptase

2.4e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

A0A5D3BHI1 Reverse transcriptase

2.4e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

A0A5D3BS67 Reverse transcriptase

2.4e-61

87.97

Show/hide

Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

A0A5D3BZJ4 CCHC-type domain-containing protein

2.4e-61

87.97

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Query:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR
        M+CPEERKV+LATFLLQKEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP TYCEAKRD F+ LKQGSLSVAEYE+KYTELSRYA+VI+ASESDRCRR
Subjt:  MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRR

Query:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE
        FER LRFEIRTPVT IAKWT+FSQLVETALR E
Subjt:  FERELRFEIRTPVTTIAKWTDFSQLVETALRAE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTTGTCCTGAGGAGCGAAAAGTCAAATTAGCCACATTCCTTTTGCAAAAGGAGGCGGAGGGATGGTGGAAATCCATTATAGCCAGGCGCAGTGATGCACGTACGTT
AGATTGGCAGACATTCAGAGGCATATTTGAGGAAAAGTACTATCCCTTCACATATTGTGAGGCAAAGAGAGATGGGTTTATTGAGCTGAAACAAGGGTCACTTTCAGTGG
CCGAGTACGAGAAGAAGTATACCGAGCTTTCACGGTATGCTGAAGTGATTGTGGCATCTGAGAGTGACAGGTGTCGCAGGTTTGAGAGAGAGTTGCGTTTTGAGATACGT
ACCCCAGTTACCACAATTGCCAAGTGGACGGATTTTTCCCAGCTAGTAGAGACTGCCTTACGTGCGGAGTAG

mRNA sequence

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Protein sequence

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MSCPEERKVKLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPFTYCEAKRDGFIELKQGSLSVAEYEKKYTELSRYAEVIVASESDRCRRFERELRFEIR
TPVTTIAKWTDFSQLVETALRAE

Lag0008425 (gene) of Sponge gourd (AG-4) v1 genome