; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008434 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008434
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr9:21522801..21523328
RNA-Seq ExpressionLag0008434
SyntenyLag0008434
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]2.6e-3850Show/hide
Query:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQ-PSRINPAYEQWYERDQALITLINATLTQTALSY
        SS+  +S + + LL+NICNL+S+RLDSTN+VLW+FQ++ +LK+HKLF +VDG+   P     T    P + NP YE W  +DQAL+T+INATL+  AL+Y
Subjt:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQ-PSRINPAYEQWYERDQALITLINATLTQTALSY

Query:  VIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        V+G  ++K+VWD L K +SS +R+N+V LKS+LQ++ KK  E++D Y++R+K+I ++LA VS  I+
Subjt:  VIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]3.4e-3849.09Show/hide
Query:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYV
        SS+ +N  + + LL+NICNL+S++LDSTNYVLW+FQ++ LLK+HKLF ++DG+   P +           NP+Y+ W+ +DQAL+T+INATL+  AL+YV
Subjt:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYV

Query:  IGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        +G  T+K+VW+ L K +SSS+R+N+V LKS+LQ++ KK+ E++D Y++R+K+I ++LA VS V++
Subjt:  IGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]2.6e-3850Show/hide
Query:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQ-PSRINPAYEQWYERDQALITLINATLTQTALSY
        SS+  +S + + LL+NICNL+S+RLDSTN+VLW+FQ++ +LK+HKLF +VDG+   P     T    P + NP YE W  +DQAL+T+INATL+  AL+Y
Subjt:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQ-PSRINPAYEQWYERDQALITLINATLTQTALSY

Query:  VIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        V+G  ++K+VWD L K +SS +R+N+V LKS+LQ++ KK  E++D Y++R+K+I ++LA VS  I+
Subjt:  VIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]1.5e-4150.83Show/hide
Query:  ALISSSNSNS---NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL----RTEGQPSR------INPAYEQWYERDQAL
        A+ SSS +     ++ + LL+NICNLVS+RLDST+++LW+FQ++ +LK+HKLF ++DGS  AP   L     TE QP+       INP +E W  +DQAL
Subjt:  ALISSSNSNS---NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL----RTEGQPSR------INPAYEQWYERDQAL

Query:  ITLINATLTQTALSYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        +TLINATL+  AL+YV+   T+K+VW+ LEKH+SS++RTN+V LKS+LQS++KKT E++D YV+R+K+I ++ A VS+ I+
Subjt:  ITLINATLTQTALSYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

XP_022158689.1 uncharacterized protein LOC111025150 [Momordica charantia]1.1e-3949.08Show/hide
Query:  NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL-----RTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIG
        ++ + LL+NICNLVS+RLDS+N+VLW+FQ++ +LK+HKL+ ++DGS   P   L      +   P   NPA+ +W  +D AL+TL+NA L+ +AL+YV+G
Subjt:  NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL-----RTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIG

Query:  CKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        C ++++VW  L KH+SSS+RTN+V LKS+LQS+ KK G ++D YVQR+K++ ++LA V V++D
Subjt:  CKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X28.2e-3848.21Show/hide
Query:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAP---DAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTAL
        SS+  +S + + LL+NICNL+S+RLDSTN+VLW+FQ++ +LK+HKL+ ++DG+   P   +    T   P + NP+YE W  +DQAL+T+INATL+  AL
Subjt:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAP---DAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTAL

Query:  SYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        +YV+G  ++K+VWD L K +SS +R+N+V LKS+LQ++ KK  E++D Y++R+K+I ++LA VS  I+
Subjt:  SYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

A0A5D3CLI6 T4.58.2e-3848.21Show/hide
Query:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAP---DAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTAL
        SS+  +S + + LL+NICNL+S+RLDSTN+VLW+FQ++ +LK+HKL+ ++DG+   P   +    T   P + NP+YE W  +DQAL+T+INATL+  AL
Subjt:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAP---DAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTAL

Query:  SYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        +YV+G  ++K+VWD L K +SS +R+N+V LKS+LQ++ KK  E++D Y++R+K+I ++LA VS  I+
Subjt:  SYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

A0A5J5ARL5 Retrotran_gag_3 domain-containing protein4.8e-3851.5Show/hide
Query:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTE-GQ-PSRINPAYEQWYERDQALITLINATLTQTALS
        S+S S+  T + LL+NICNL++VRLDSTNYV W+FQ + +LK+H L ++VDGS + P+  LR E G+  + INP ++ W  +DQALITLIN TL+ TAL+
Subjt:  SSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTE-GQ-PSRINPAYEQWYERDQALITLINATLTQTALS

Query:  YVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        ++IG  +A+EVW  LE+ FSSS+R NI+ LK+ELQS+  K   ++D Y+Q++K+I ++L +VSV I+
Subjt:  YVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

A0A6J1D9L6 uncharacterized protein LOC1110188927.2e-4250.83Show/hide
Query:  ALISSSNSNS---NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL----RTEGQPSR------INPAYEQWYERDQAL
        A+ SSS +     ++ + LL+NICNLVS+RLDST+++LW+FQ++ +LK+HKLF ++DGS  AP   L     TE QP+       INP +E W  +DQAL
Subjt:  ALISSSNSNS---NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL----RTEGQPSR------INPAYEQWYERDQAL

Query:  ITLINATLTQTALSYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        +TLINATL+  AL+YV+   T+K+VW+ LEKH+SS++RTN+V LKS+LQS++KKT E++D YV+R+K+I ++ A VS+ I+
Subjt:  ITLINATLTQTALSYVIGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

A0A6J1E049 uncharacterized protein LOC1110251505.1e-4049.08Show/hide
Query:  NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL-----RTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIG
        ++ + LL+NICNLVS+RLDS+N+VLW+FQ++ +LK+HKL+ ++DGS   P   L      +   P   NPA+ +W  +D AL+TL+NA L+ +AL+YV+G
Subjt:  NTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAIL-----RTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIG

Query:  CKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
        C ++++VW  L KH+SSS+RTN+V LKS+LQS+ KK G ++D YVQR+K++ ++LA V V++D
Subjt:  CKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.2e-1328.3Show/hide
Query:  SNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIGCKTA
        +NTS+ L  N+ N+   +L STNY++W  Q+  L   ++L  ++DGS   P A + T+  P R+NP Y +W  +D+ + + +   ++ +    V    TA
Subjt:  SNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIGCKTA

Query:  KEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID
         ++W+ L K +++ +  ++  L+++L+   K T +T+D Y+Q +    ++LA +   +D
Subjt:  KEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.1e-1028.1Show/hide
Query:  SVSLLN-NICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIGCKTAKE
        + ++LN N+ N+   +L STNY++W  Q+  L   ++L  ++DGS   P A + T+  P R+NP Y +W  +D+ + + I   ++ +    V    TA +
Subjt:  SVSLLN-NICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYVIGCKTAKE

Query:  VWDRLEKHFSSSTRTNIVGLK
        +W+ L K +++ +  ++  L+
Subjt:  VWDRLEKHFSSSTRTNIVGLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTACCACCGATCAAGCCCTAATTTCCAGTTCGAATTCAAATTCGAACACGTCTGTCTCACTTCTCAACAATATCTGCAATTTAGTCTCTGTTCGCTTGGATTC
CACGAATTACGTGCTATGGCGTTTTCAGATTTCGCCCCTTCTCAAGTCGCACAAGCTATTCAAGTATGTTGACGGCTCATTTGAAGCTCCTGATGCAATTCTTCGCACTG
AAGGACAACCTTCTCGGATTAATCCAGCCTATGAGCAATGGTATGAGAGAGATCAAGCCCTCATCACTCTGATCAATGCAACCTTGACGCAAACAGCCCTATCGTATGTC
ATTGGGTGCAAAACGGCAAAGGAGGTATGGGACAGATTGGAGAAGCATTTTTCCTCTTCAACGCGTACGAACATCGTTGGATTAAAGTCTGAATTACAAAGTGTTATGAA
GAAAACTGGTGAGACTGTCGATCAATATGTGCAGCGTGTTAAAGATATCGTAAATCGATTGGCTGCTGTCTCAGTTGTTATCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTACCACCGATCAAGCCCTAATTTCCAGTTCGAATTCAAATTCGAACACGTCTGTCTCACTTCTCAACAATATCTGCAATTTAGTCTCTGTTCGCTTGGATTC
CACGAATTACGTGCTATGGCGTTTTCAGATTTCGCCCCTTCTCAAGTCGCACAAGCTATTCAAGTATGTTGACGGCTCATTTGAAGCTCCTGATGCAATTCTTCGCACTG
AAGGACAACCTTCTCGGATTAATCCAGCCTATGAGCAATGGTATGAGAGAGATCAAGCCCTCATCACTCTGATCAATGCAACCTTGACGCAAACAGCCCTATCGTATGTC
ATTGGGTGCAAAACGGCAAAGGAGGTATGGGACAGATTGGAGAAGCATTTTTCCTCTTCAACGCGTACGAACATCGTTGGATTAAAGTCTGAATTACAAAGTGTTATGAA
GAAAACTGGTGAGACTGTCGATCAATATGTGCAGCGTGTTAAAGATATCGTAAATCGATTGGCTGCTGTCTCAGTTGTTATCGATTAA
Protein sequenceShow/hide protein sequence
METTTDQALISSSNSNSNTSVSLLNNICNLVSVRLDSTNYVLWRFQISPLLKSHKLFKYVDGSFEAPDAILRTEGQPSRINPAYEQWYERDQALITLINATLTQTALSYV
IGCKTAKEVWDRLEKHFSSSTRTNIVGLKSELQSVMKKTGETVDQYVQRVKDIVNRLAAVSVVID