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Lag0008444 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008444
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr9:21957760..21958270
RNA-Seq ExpressionLag0008444
SyntenyLag0008444
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146774.1 uncharacterized protein LOC111015901 [Momordica charantia]1.5e-2335.96Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGE-----------------
        +Y       +  +EF+E EA  + HPHNDALV+TL I NAKVHR+L+DGG+STD+ S T ++AM LG +  +    PL+GFG                  
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGE-----------------

Query:  ------------------------KRATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKT
                                +R T+H L+ + STYHQ +KFPT   V  + GEQ+ S+ECY+T+++  ++ + T
Subjt:  ------------------------KRATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKT

XP_022155186.1 uncharacterized protein LOC111022321 [Momordica charantia]3.3e-2335.91Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------
        +Y          +EF+E EA  + HPHNDALV+TL I N KVHR+L+DGG+S D++S T ++AM LG    +    PLVGFG +R               
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------

Query:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC
                                   T+H LK + STYHQ  KFPT   V  + GEQ+ S+ECY T++++ +R +    C
Subjt:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]3.7e-2237.28Show/hide
Query:  LEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------------------
        +EF+E EA  + H HNDALV+TL I N KVHR+L+DGG+S D++S T ++AM L     +    PLVGFG +R                           
Subjt:  LEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------------------

Query:  ---------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC
                       T+H LKV+ STYHQ +KFPT   V  + GEQ+ S+ECY+T+++  +R +    C
Subjt:  ---------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC

XP_022158093.1 uncharacterized protein LOC111024662 [Momordica charantia]4.3e-2337.22Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------
        +Y   F      ++F+E E   + HPHNDALV+TL ITN KVHR+L+DGG+ST ++S T ++AM LG    +    PLVGFG +R               
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------

Query:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLK--ETERKAKT
                                   T+H LK + STYH+ LKFPT+  +  V GEQ+ S ECY+T+L+  +T  +A T
Subjt:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLK--ETERKAKT

XP_022158687.1 uncharacterized protein LOC111025147 [Momordica charantia]2.5e-2334.81Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEK----------------
        +Y       +  +EF+E EA  + HPHNDALV+TL I N KVHR+L+DGG+S D++S T ++ M LG    +    PL+GFG +                
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEK----------------

Query:  -------------------------RATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC
                                 R+T+H LK + STYHQ +KFPT   V  + GEQ+ S+ECY+T+++  +R +    C
Subjt:  -------------------------RATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC

TrEMBL top hitse value%identityAlignment
A0A6J1CZ14 uncharacterized protein LOC1110159017.2e-2435.96Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGE-----------------
        +Y       +  +EF+E EA  + HPHNDALV+TL I NAKVHR+L+DGG+STD+ S T ++AM LG +  +    PL+GFG                  
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGE-----------------

Query:  ------------------------KRATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKT
                                +R T+H L+ + STYHQ +KFPT   V  + GEQ+ S+ECY+T+++  ++ + T
Subjt:  ------------------------KRATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKT

A0A6J1DQY2 uncharacterized protein LOC1110223211.6e-2335.91Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------
        +Y          +EF+E EA  + HPHNDALV+TL I N KVHR+L+DGG+S D++S T ++AM LG    +    PLVGFG +R               
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------

Query:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC
                                   T+H LK + STYHQ  KFPT   V  + GEQ+ S+ECY T++++ +R +    C
Subjt:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC

A0A6J1DRG9 uncharacterized protein LOC1110235871.8e-2237.28Show/hide
Query:  LEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------------------
        +EF+E EA  + H HNDALV+TL I N KVHR+L+DGG+S D++S T ++AM L     +    PLVGFG +R                           
Subjt:  LEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------------------

Query:  ---------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC
                       T+H LKV+ STYHQ +KFPT   V  + GEQ+ S+ECY+T+++  +R +    C
Subjt:  ---------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC

A0A6J1DV51 uncharacterized protein LOC1110246622.1e-2337.22Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------
        +Y   F      ++F+E E   + HPHNDALV+TL ITN KVHR+L+DGG+ST ++S T ++AM LG    +    PLVGFG +R               
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEKRA--------------

Query:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLK--ETERKAKT
                                   T+H LK + STYH+ LKFPT+  +  V GEQ+ S ECY+T+L+  +T  +A T
Subjt:  ---------------------------TLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLK--ETERKAKT

A0A6J1DXV4 uncharacterized protein LOC1110251471.2e-2334.81Show/hide
Query:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEK----------------
        +Y       +  +EF+E EA  + HPHNDALV+TL I N KVHR+L+DGG+S D++S T ++ M LG    +    PL+GFG +                
Subjt:  MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFR---PPLVGFGEK----------------

Query:  -------------------------RATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC
                                 R+T+H LK + STYHQ +KFPT   V  + GEQ+ S+ECY+T+++  +R +    C
Subjt:  -------------------------RATLHELKVVASTYHQILKFPTENSVRAVHGEQKTSKECYFTTLKETERKAKTVPC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCACTCCAGTTTGAAAAAAGTACATTTGCTCTAGAGTTTACAGAGAAAGAGGCTGCAGGAATCCATCACCCTCACAATGACGCGTTGGTGGTAACTCTGACCAT
CACCAATGCAAAGGTCCATCGGGTCCTAATTGACGGAGGAAATTCCACTGATGTCCTTTCCACAACCGTATTCGAGGCTATGAAATTAGGGAGAGACCGTTTCAGGCCAC
CATTGGTAGGGTTTGGGGAGAAAAGGGCGACCCTGCATGAGCTTAAAGTCGTGGCATCCACTTATCACCAAATCTTGAAGTTTCCCACGGAGAACAGTGTAAGAGCAGTA
CACGGAGAGCAGAAGACGTCCAAAGAGTGCTACTTCACAACACTCAAGGAAACAGAGAGAAAAGCCAAAACAGTCCCCTGCTTGGACAATAGTCGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTCACTCCAGTTTGAAAAAAGTACATTTGCTCTAGAGTTTACAGAGAAAGAGGCTGCAGGAATCCATCACCCTCACAATGACGCGTTGGTGGTAACTCTGACCAT
CACCAATGCAAAGGTCCATCGGGTCCTAATTGACGGAGGAAATTCCACTGATGTCCTTTCCACAACCGTATTCGAGGCTATGAAATTAGGGAGAGACCGTTTCAGGCCAC
CATTGGTAGGGTTTGGGGAGAAAAGGGCGACCCTGCATGAGCTTAAAGTCGTGGCATCCACTTATCACCAAATCTTGAAGTTTCCCACGGAGAACAGTGTAAGAGCAGTA
CACGGAGAGCAGAAGACGTCCAAAGAGTGCTACTTCACAACACTCAAGGAAACAGAGAGAAAAGCCAAAACAGTCCCCTGCTTGGACAATAGTCGAGGTTGA
Protein sequenceShow/hide protein sequence
MYSLQFEKSTFALEFTEKEAAGIHHPHNDALVVTLTITNAKVHRVLIDGGNSTDVLSTTVFEAMKLGRDRFRPPLVGFGEKRATLHELKVVASTYHQILKFPTENSVRAV
HGEQKTSKECYFTTLKETERKAKTVPCLDNSRG