; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008464 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008464
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr9:22387418..22388460
RNA-Seq ExpressionLag0008464
SyntenyLag0008464
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-8971.09Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        +KYYP+TYCE+KRDEFL LKQGSLSVAEYERKYTELSRYA+VI+ASESDR RRFERGLRFEIRTPVTAI KWTNFSQLVETALRVEQSI EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  TASGFRGRE+RRFTPG+N                            SQR PSQ   S  R + GQ+SI S  RR PC SCG+NHRGQCLVGAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CGQP HFK+D PQL   VQRDQGV S T+EQ RV     EGTSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-9171.88Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        EKYYPTTYCE+KRDEFLELKQ SLSVA+YERKYTELSRYAE+IVASESDR  RFERGLRFEIRTPVTAI KW NFSQLVETALRV+QSI+EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  T SG RGRE+RRFTPGVN                            S+RA SQ A+SVAR RTGQ+S+ SES+RTPCVSCGK+H+G+C++GAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CG+  HFKRD PQLR  V+RDQGVESHTVEQ R+   AGE TSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-9273.83Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        EKYYPTT CE+KRDEFLELKQGSLSVA+Y+RKYTELS YAEVI+ASESDR RRFERGL FEIRTPVTAI KWT+FSQL+ETALRVEQSI+EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  T S  RGRE+RR TPGVN                            SQRA SQ  +SVARPRTGQ+S+ SESRRTPCVSC K+HRGQCLVGAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CGQ  HFKRD PQLR  VQRDQGVESHTVEQPR+LA A EGTSGARQK VVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-8971.09Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        +KYYP+TYCE+KRDEFL LKQGSLSVAEYERKYTELSRYA+VI+ASESDR RRFERGLRFEIRTPVTAI KWTNFSQLVETALRVEQSI EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  TASGFRGRE+RRFTPG+N                            SQR PSQ   S  R + GQ+SI S  RR PC SCG+NHRGQCLVGAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CGQP HFK+D PQL   VQRDQGV S T+EQ RV     EGTSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-9171.88Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        EKYYPTTYCE+KRDEFLELKQ SLSVA+YERKYTELSRYAE+IVASESDR  RFERGLRFEIRTPVTAI KW NFSQLVETALRV+QSI+EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  T SG RGRE+RRFTPGVN                            S+RA SQ A+SVAR RTGQ+S+ SES+RTPCVSCGK+H+G+C++GAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CG+  HFKRD PQLR  V+RDQGVESHTVEQ R+   AGE TSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.4e-9171.88Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        EKYYPTTYCE+KRDEFLELKQ SLSVA+YERKYTELSRYAE+IVASESDR  RFERGLRFEIRTPVTAI KW NFSQLVETALRV+QSI+EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  T SG RGRE+RRFTPGVN                            S+RA SQ A+SVAR RTGQ+S+ SES+RTPCVSCGK+H+G+C++GAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CG+  HFKRD PQLR  V+RDQGVESHTVEQ R+   AGE TSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

A0A5A7U2V7 Reverse transcriptase2.2e-8971.09Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        +KYYP+TYCE+KRDEFL LKQGSLSVAEYERKYTELSRYA+VI+ASESDR RRFERGLRFEIRTPVTAI KWTNFSQLVETALRVEQSI EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  TASGFRGRE+RRFTPG+N                            SQR PSQ   S  R + GQ+SI S  RR PC SCG+NHRGQCLVGAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CGQP HFK+D PQL   VQRDQGV S T+EQ RV     EGTSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.2e-9273.83Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        EKYYPTT CE+KRDEFLELKQGSLSVA+Y+RKYTELS YAEVI+ASESDR RRFERGL FEIRTPVTAI KWT+FSQL+ETALRVEQSI+EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  T S  RGRE+RR TPGVN                            SQRA SQ  +SVARPRTGQ+S+ SESRRTPCVSC K+HRGQCLVGAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CGQ  HFKRD PQLR  VQRDQGVESHTVEQPR+LA A EGTSGARQK VVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

A0A5D3BS67 Reverse transcriptase2.2e-8971.09Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        +KYYP+TYCE+KRDEFL LKQGSLSVAEYERKYTELSRYA+VI+ASESDR RRFERGLRFEIRTPVTAI KWTNFSQLVETALRVEQSI EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  TASGFRGRE+RRFTPG+N                            SQR PSQ   S  R + GQ+SI S  RR PC SCG+NHRGQCLVGAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CGQP HFK+D PQL   VQRDQGV S T+EQ RV     EGTSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

A0A5D3BTP3 Reverse transcriptase1.4e-9171.88Show/hide
Query:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR
        EKYYPTTYCE+KRDEFLELKQ SLSVA+YERKYTELSRYAE+IVASESDR  RFERGLRFEIRTPVTAI KW NFSQLVETALRV+QSI+EEKSA E SR
Subjt:  EKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEPSR

Query:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ
        G  T SG RGRE+RRFTPGVN                            S+RA SQ A+SVAR RTGQ+S+ SES+RTPCVSCGK+H+G+C++GAGVCYQ
Subjt:  GAPTASGFRGREKRRFTPGVN----------------------------SQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQ

Query:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ
        CG+  HFKRD PQLR  V+RDQGVESHTVEQ R+   AGE TSGARQKGVVGRPRQ
Subjt:  CGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLAGAGEGTSGARQKGVVGRPRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTGACTCAGCCGCCACGTCATCGCGCACGGGAAAAGTACTATCCCACCACATATTGTGAGTCGAAGAGGGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTC
AGTGGCCGAATACGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGAAGTGATTGTGGCATCTGAGAGTGACAGGTATCGCAGGTTTGAGAGAGGGCTACGTTTTGAGA
TACGTACCCCAGTTACCGCTATTGTCAAGTGGACGAATTTTTCCCAGCTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATTATAGAGGAAAAGTCGGCTGCGGAGCCT
AGTCGTGGAGCTCCAACAGCTAGTGGTTTCCGAGGTCGTGAGAAACGGAGGTTCACACCTGGAGTGAATAGTCAGAGAGCCCCCAGTCAGTCTGCAAGTTCAGTAGCAAG
ACCGCGGACGGGTCAGAAGTCCATTACTAGTGAATCCAGGAGAACCCCATGTGTAAGTTGTGGCAAGAATCATCGGGGTCAGTGTCTTGTTGGCGCTGGTGTATGTTACC
AGTGTGGACAACCAAGGCATTTTAAGAGGGATGTCCCACAGCTGAGGGGAGCAGTTCAGAGGGACCAGGGAGTTGAGTCCCACACAGTTGAGCAGCCGAGAGTCTTAGCA
GGCGCAGGAGAAGGCACCAGTGGTGCAAGGCAAAAGGGAGTTGTGGGGAGACCTAGGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGCTGACTCAGCCGCCACGTCATCGCGCACGGGAAAAGTACTATCCCACCACATATTGTGAGTCGAAGAGGGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTC
AGTGGCCGAATACGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGAAGTGATTGTGGCATCTGAGAGTGACAGGTATCGCAGGTTTGAGAGAGGGCTACGTTTTGAGA
TACGTACCCCAGTTACCGCTATTGTCAAGTGGACGAATTTTTCCCAGCTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATTATAGAGGAAAAGTCGGCTGCGGAGCCT
AGTCGTGGAGCTCCAACAGCTAGTGGTTTCCGAGGTCGTGAGAAACGGAGGTTCACACCTGGAGTGAATAGTCAGAGAGCCCCCAGTCAGTCTGCAAGTTCAGTAGCAAG
ACCGCGGACGGGTCAGAAGTCCATTACTAGTGAATCCAGGAGAACCCCATGTGTAAGTTGTGGCAAGAATCATCGGGGTCAGTGTCTTGTTGGCGCTGGTGTATGTTACC
AGTGTGGACAACCAAGGCATTTTAAGAGGGATGTCCCACAGCTGAGGGGAGCAGTTCAGAGGGACCAGGGAGTTGAGTCCCACACAGTTGAGCAGCCGAGAGTCTTAGCA
GGCGCAGGAGAAGGCACCAGTGGTGCAAGGCAAAAGGGAGTTGTGGGGAGACCTAGGCAGTAG
Protein sequenceShow/hide protein sequence
MMLTQPPRHRAREKYYPTTYCESKRDEFLELKQGSLSVAEYERKYTELSRYAEVIVASESDRYRRFERGLRFEIRTPVTAIVKWTNFSQLVETALRVEQSIIEEKSAAEP
SRGAPTASGFRGREKRRFTPGVNSQRAPSQSASSVARPRTGQKSITSESRRTPCVSCGKNHRGQCLVGAGVCYQCGQPRHFKRDVPQLRGAVQRDQGVESHTVEQPRVLA
GAGEGTSGARQKGVVGRPRQ