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Lag0008470 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008470
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S13
Genome locationchr9:22589009..22591985
RNA-Seq ExpressionLag0008470
SyntenyLag0008470
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2311747.1 hypothetical protein GH714_026488 [Hevea brasiliensis]8.7e-2687.5Show/hide
Query:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        FQV ENICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

MBA0719002.1 hypothetical protein [Gossypium laxum]4.3e-2587.32Show/hide
Query:  QVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        QV ENICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  QVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

XP_009596116.1 40S ribosomal protein S13-like [Nicotiana tomentosiformis]1.9e-2584.93Show/hide
Query:  LFQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        +FQV +NICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  LFQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

XP_016509568.1 PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum]1.9e-2586.11Show/hide
Query:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        FQV +NICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

XP_016557534.1 PREDICTED: 40S ribosomal protein S13-like, partial [Capsicum annuum]4.3e-2584.93Show/hide
Query:  LFQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        L QV +NICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  LFQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

TrEMBL top hitse value%identityAlignment
A0A1S4D890 30S ribosomal protein S15, chloroplastic9.4e-2686.11Show/hide
Query:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        FQV +NICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

A0A1U8FP47 30S ribosomal protein S15, chloroplastic2.1e-2584.93Show/hide
Query:  LFQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        L QV +NICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  LFQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

A0A438IWY4 40S ribosomal protein S132.7e-2584.72Show/hide
Query:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        F V ENICKFAKKG+TPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

A0A6A6MFQ6 Ribosomal_S13_N domain-containing protein4.2e-2687.5Show/hide
Query:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        FQV ENICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  FQVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

A0A7J9A571 Ribosomal_S13_N domain-containing protein2.1e-2587.32Show/hide
Query:  QVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        QV ENICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  QVAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.4e-2685.71Show/hide
Query:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        V E ICKFAKKGLTPS+IGVILRDSHGI+QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

P59223 40S ribosomal protein S13-12.4e-2685.71Show/hide
Query:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        V E+ICKFAKKGLTPS+IGVILRDSHGI QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

P59224 40S ribosomal protein S13-22.4e-2685.71Show/hide
Query:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        V E+ICKFAKKGLTPS+IGVILRDSHGI QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

P62302 40S ribosomal protein S131.4e-2685.71Show/hide
Query:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        V ENICKFAKKGLTPS+IGVILRDSHGI+QV SVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

Q56JX8 40S ribosomal protein S132.3e-2172.86Show/hide
Query:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        V E I K AKKGLTPS+IGVILRDSHG++QV+ VTG+KILRILK+ GLAP + +DLYHLIKK V  RKHL
Subjt:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S151.7e-2785.71Show/hide
Query:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        V E+ICKFAKKGLTPS+IGVILRDSHGI QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL

AT4G00100.1 ribosomal protein S13A1.7e-2785.71Show/hide
Query:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL
        V E+ICKFAKKGLTPS+IGVILRDSHGI QVKSVTGSKILRILKAHGLAP+I +DLYHLIKK V  RKHL
Subjt:  VAENICKFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGAAGACTTATCTTCGCAAACGGCAGCAACGAGGACGAGGCGACTTCTCTTCACGAACGGTCTAACACACCAATGGCGGCAGCAAAGAGGGACCTTTCTTTTCA
AACGGCGGCAATAGTATTTCCCTCATCGACAACAACCACACAATTTAGAGTAGGCGACGAAGAATGGGGCTTTTTGGGTCTTACTCTCGAGCAGGCGGCAGAGAAGAAGA
GATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCCGAGAACATTTGC
AAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTCCGTGATTCTCACGGGATTTCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATT
GAAGGCTCATGGGCTAGCTCCTAAAATCTCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTTAACCAGAAAGCATTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGAAGACTTATCTTCGCAAACGGCAGCAACGAGGACGAGGCGACTTCTCTTCACGAACGGTCTAACACACCAATGGCGGCAGCAAAGAGGGACCTTTCTTTTCA
AACGGCGGCAATAGTATTTCCCTCATCGACAACAACCACACAATTTAGAGTAGGCGACGAAGAATGGGGCTTTTTGGGTCTTACTCTCGAGCAGGCGGCAGAGAAGAAGA
GATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCCGAGAACATTTGC
AAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTCCGTGATTCTCACGGGATTTCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATT
GAAGGCTCATGGGCTAGCTCCTAAAATCTCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTTAACCAGAAAGCATTTGTAG
Protein sequenceShow/hide protein sequence
MARRLIFANGSNEDEATSLHERSNTPMAAAKRDLSFQTAAIVFPSSTTTTQFRVGDEEWGFLGLTLEQAAEKKRCNHYTKSFRRINAKQTLLRNVSAYAEFLFQVAENIC
KFAKKGLTPSEIGVILRDSHGISQVKSVTGSKILRILKAHGLAPKISKDLYHLIKKVVLTRKHL