| GenBank top hits | e value | %identity | Alignment |
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| RVW48321.1 Transposon Ty3-I Gag-Pol polyprotein [Vitis vinifera] | 4.3e-42 | 30.16 | Show/hide |
Query: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFF
TN Q Q+++ + FKKL PP F G +TD E WI ++EK F +D ++ QK E F++K+F
Subjt: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFF
Query: PPTVRQDKEAEFIKLEQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFL
P +VR+ K EFI+LEQG + + +YE F LS+++P L+ T+ +KA +F+ GL+ L RE KR
Subjt: PPTVRQDKEAEFIKLEQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFL
Query: EGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQ
+G +Q Q++ STSG+ C TCGKKH G YR +G CF CGK G+LI +CP ++K +++ ++K K +G VF M +
Subjt: EGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQ
Query: QANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNL------------------------------------VPVEL----------------
A +V++GT+ I + A +LID GSTHS +SVS L L +PV+L
Subjt: QANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNL------------------------------------VPVEL----------------
Query: --------------------------NYVLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
+ +LK ASV++NE K +E+IP+V ++ DVFPEDLPGLP ++E+EF+IDLV GT P+S AP
Subjt: --------------------------NYVLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| RVW65229.1 Transposon Ty3-I Gag-Pol polyprotein [Vitis vinifera] | 1.3e-43 | 30.64 | Show/hide |
Query: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFF
TN Q Q+++ + FKKL PP F G +TD E WI ++EK+F +D ++ QK E F++K+F
Subjt: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFF
Query: PPTVRQDKEAEFIKLEQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFL
P +VR+ K EFI+LEQG + + +YE F LS+++P L+ T+ +KA +F+ GL+ L RE KR
Subjt: PPTVRQDKEAEFIKLEQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFL
Query: EGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQG-MYYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQ
+G +Q Q++ STSG+ C TCGKKH G YR +GACF CGK G+LI +CP ++K +++ ++K K +G VF M +
Subjt: EGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQG-MYYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQ
Query: QANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY--------------------------------------------------
A +V++GT+ I + A +LID GSTHS +SVS L L +++
Subjt: QANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY--------------------------------------------------
Query: -----------------VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
+LK ASVV+NE K +E+IP+V ++ DVFPEDLPGLP ++E+EF+IDLV GT P+S AP
Subjt: -----------------VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| RVW67380.1 Transposon Ty3-G Gag-Pol polyprotein [Vitis vinifera] | 8.9e-48 | 34.59 | Show/hide |
Query: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-------ELFFEKFFPPTVRQDKEAEFIKLEQGKLCLLEYERM
TN Q Q+++ + FKKL PP F G +TD E WI ++EK F +D ++ QK E F++K+FP +VR+ K EFI+LEQG + + +YE
Subjt: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-------ELFFEKFFPPTVRQDKEAEFIKLEQGKLCLLEYERM
Query: FDALSQYAPHLVDTDWKKA-RQFERGLRLEL---REGSSKRKFLEGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRC
F LS+++P L+ T+ +KA + R EL RE KR +G +Q Q++ STSG+ C TCGKKH G YR +GACF C
Subjt: FDALSQYAPHLVDTDWKKA-RQFERGLRLEL---REGSSKRKFLEGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRC
Query: GKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY------
GK G+LI +CP ++K +++ ++K K +G VF M + A +V++GT+ I + A +LID GSTHS +SVS L L +++
Subjt: GKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY------
Query: -----------------------------------------------------------VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLP
+LK ASVV+NE K +E+IP+V ++ DVFPEDLP
Subjt: -----------------------------------------------------------VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLP
Query: GLPLDKEIEFSIDLVLGTAPLSIAP
GLP ++E+EF+IDLV GT P+S AP
Subjt: GLPLDKEIEFSIDLVLGTAPLSIAP
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| RVW84176.1 Retrovirus-related Pol polyprotein from transposon 17.6, partial [Vitis vinifera] | 3.7e-46 | 32.21 | Show/hide |
Query: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFF
TN Q Q+++ + FKKL PP F G +TD E WI ++EK F +D ++ QK E F++K+F
Subjt: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFF
Query: PPTVRQDKEAEFIKLEQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFL
P +VR+ K EFI+LEQG + + +YE F LS+++P L+ T+ +KA +F+ GL+ L RE KR
Subjt: PPTVRQDKEAEFIKLEQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFL
Query: EGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQ
+G +Q Q++ STSG+ C TCGKKH G YR +GACF CGK G+LI +CP ++K +++ ++K K +G VF M +
Subjt: EGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQ
Query: QANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNL------------------------------------VPVELNYV-LKSASVVNNEKT
A +V++GT+ I + A +LID GSTHS +SVS L L +PV+L + L+ V+
Subjt: QANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNL------------------------------------VPVELNYV-LKSASVVNNEKT
Query: GKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
+E+IP+V ++ DVFPEDLPGLP ++E+EF+IDLV GT P+S AP
Subjt: GKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| RVX14555.1 Transposon Ty3-G Gag-Pol polyprotein [Vitis vinifera] | 4.3e-42 | 30.9 | Show/hide |
Query: EQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
+ FKKL PP F G +TD E WI ++EK F +D ++ QK E F++K+FP +VR+ K EFI+L
Subjt: EQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
Query: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFLEGQSSSQPQKKVGPS
EQG + + +YE F LS+++P L+ T+ +KA +F+ GL+ L RE KR +G +Q Q++ S
Subjt: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL--------------------------------REGSSKRKFLEGQSSSQPQKKVGPS
Query: TSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILI
TSG+ C TCGKKH G YR +GACF CGK G+LI +CP ++K +++ ++K K +G VF M + A +V++GT+ I
Subjt: TSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRCGKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILI
Query: SRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY-----------------------------------------------------------------
+ A +LID GSTHS +SVS L L +++
Subjt: SRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY-----------------------------------------------------------------
Query: VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
+LK ASVV+NE K +E+IP+V ++ DVFPEDLPGLP ++E+EF+IDLV GT P+S AP
Subjt: VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2N9H1T8 Reverse transcriptase | 1.2e-50 | 32.82 | Show/hide |
Query: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
+E+F+KL PPSF G S D + + W++E+++LF M+ D Q+ +LF +++FP ++R KEAEFI++
Subjt: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
Query: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
EQG + EYER F LS++APH+VD + +KAR FERGLR E+ + +RK FL+G+SS KK
Subjt: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
Query: GPSTSGQIPE--CKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
G S S + C CGK H G Y +GACF+CGK G+ I +CP Q +TD + ++K KV G VF + +Q A P+V+SGT++I+ A +L DS
Subjt: GPSTSGQIPE--CKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
Query: GSTHSLISVSIVQNLNLVPVELNYVLK----SASVVNNEKTGKS--------------------------------------------------------
GSTHS IS S + LN++P L++ L S V+ +K KS
Subjt: GSTHSLISVSIVQNLNLVPVELNYVLK----SASVVNNEKTGKS--------------------------------------------------------
Query: -------------IEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
E+I VV +F DVF EDL GLP ++E+EF+IDLV GT P+S AP
Subjt: -------------IEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| A0A2N9H6B6 Reverse transcriptase | 1.4e-46 | 30.66 | Show/hide |
Query: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
+E+F+KL PPSF G S D + + W++E+++LF M+ D Q+ +LF +++FP ++R KEAEFI++
Subjt: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
Query: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
EQG + EYER F LS++APH+VD + +KAR FERGLR E+ + +RK FL+G+SS K+
Subjt: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
Query: GPSTSGQ--IPECKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
G S S + C CGK H G Y + ACF+CGK G+ I +CP Q +TD + ++K KV G VF + +Q A P+V+SGT++I+ A +L DS
Subjt: GPSTSGQ--IPECKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
Query: GSTHSLISVSIVQNLNLVPVELNY----------------VLKS--------------------------------------------------------
GSTHS IS S + LN++P L++ V KS
Subjt: GSTHSLISVSIVQNLNLVPVELNY----------------VLKS--------------------------------------------------------
Query: ------------------------------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
A V+ +E T E+I VV +F DVF EDL GLP ++E+EF+IDLV GT P+S AP
Subjt: ------------------------------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| A0A2N9I6M6 Reverse transcriptase | 1.1e-46 | 30.66 | Show/hide |
Query: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
+E+F+KL PPSF G S D + + W++E+++LF M+ D Q+ +LF +++FP ++R KEAEFI++
Subjt: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
Query: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
EQG + EYER F LS++APH+VD + +KAR FERGLR E+ + +RK FL+G+SS K+
Subjt: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
Query: GPSTSGQIPE--CKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
G S S + C CGK H G Y +GACF+CGK G+ I +CP Q + D + ++K KV G VF + +Q A P+V+SGT++I+ A +L DS
Subjt: GPSTSGQIPE--CKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
Query: GSTHSLISVSIVQNLNLVPVELNY----------------VLKS--------------------------------------------------------
GSTHS IS S + LN++P L++ V KS
Subjt: GSTHSLISVSIVQNLNLVPVELNY----------------VLKS--------------------------------------------------------
Query: ------------------------------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
A V+ +E T E+I VV +F DVF EDL GLP ++E+EF+IDLV GT P+S AP
Subjt: ------------------------------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| A0A2N9IS48 Reverse transcriptase | 2.3e-49 | 32.39 | Show/hide |
Query: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
+E+F+KL PPSF G S D + + W++E+++LF M+ D Q+ +LF +++FP ++R KEAEFI++
Subjt: VEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK----------------------------------ELFFEKFFPPTVRQDKEAEFIKL
Query: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
EQG + EYER F LS++APH+VD + +KAR FERGLR E+ + +RK FL+G+SS K+
Subjt: EQGKLCLLEYERMFDALSQYAPHLVDTDWKKARQFERGLRLEL------------------------------REGSSKRK-----FLEGQSSSQPQKKV
Query: GPSTSGQIPE--CKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
G S S + C CGK H G Y + ACF+CGK G+ I +CP Q +TD + ++K KV G VF + +Q A P+V+SGT++I+ A +L DS
Subjt: GPSTSGQIPE--CKTCGKKHQGMYYRVSGACFRCGKVGNLINNCPMSQ--KTDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDS
Query: GSTHSLISVSIVQNLNLVPVELNYVLK----SASVVNNEKTGKS--------------------------------------------------------
GSTHS IS S + LN++P L++ L S V+ +K KS
Subjt: GSTHSLISVSIVQNLNLVPVELNYVLK----SASVVNNEKTGKS--------------------------------------------------------
Query: -------------IEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
E+I VV +F DVF EDL GLP ++E+EF+IDLV GT P+S AP
Subjt: -------------IEEIPVVHDFTDVFPEDLPGLPLDKEIEFSIDLVLGTAPLSIAP
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| A0A438G5B3 Transposon Ty3-G Gag-Pol polyprotein | 4.3e-48 | 34.59 | Show/hide |
Query: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-------ELFFEKFFPPTVRQDKEAEFIKLEQGKLCLLEYERM
TN Q Q+++ + FKKL PP F G +TD E WI ++EK F +D ++ QK E F++K+FP +VR+ K EFI+LEQG + + +YE
Subjt: TNRQAQANAGINRVVEQFKKLHPPSFDGTSTDSIVVEEWIEEIEKLFDFMDYNDRQK-------ELFFEKFFPPTVRQDKEAEFIKLEQGKLCLLEYERM
Query: FDALSQYAPHLVDTDWKKA-RQFERGLRLEL---REGSSKRKFLEGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRC
F LS+++P L+ T+ +KA + R EL RE KR +G +Q Q++ STSG+ C TCGKKH G YR +GACF C
Subjt: FDALSQYAPHLVDTDWKKA-RQFERGLRLEL---REGSSKRKFLEGQSSSQPQKKVGPSTSGQIPE-----------CKTCGKKHQGM-YYRVSGACFRC
Query: GKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY------
GK G+LI +CP ++K +++ ++K K +G VF M + A +V++GT+ I + A +LID GSTHS +SVS L L +++
Subjt: GKVGNLINNCPMSQK------TDDSTVQEKKHKVKGAVFYMPKQQANDEPNVLSGTILISRIIAFILIDSGSTHSLISVSIVQNLNLVPVELNY------
Query: -----------------------------------------------------------VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLP
+LK ASVV+NE K +E+IP+V ++ DVFPEDLP
Subjt: -----------------------------------------------------------VLKS------ASVVNNEKTGKSIEEIPVVHDFTDVFPEDLP
Query: GLPLDKEIEFSIDLVLGTAPLSIAP
GLP ++E+EF+IDLV GT P+S AP
Subjt: GLPLDKEIEFSIDLVLGTAPLSIAP
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