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Lag0008490 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008490
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPolyadenylate-binding protein
Genome locationchr9:23376975..23379410
RNA-Seq ExpressionLag0008490
SyntenyLag0008490
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003730 - mRNA 3'-UTR binding (molecular function)
GO:0008143 - poly(A) binding (molecular function)
GO:0008266 - poly(U) RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5520747.1 hypothetical protein DKX38_025066 [Salix brachista]2.1e-2456.69Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK------------QGCN------------------------
        +AI  KALHDTFSAFG+IL CKVA DSSGQSKGYGF+QFD+++ A K IEKLNGMLLNDK            QG N                        
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK------------QGCN------------------------

Query:  --SIQVMRDPNGISRGSGFVAFSTPGE
          S +VMRDPNGISRGSGFVAFSTP E
Subjt:  --SIQVMRDPNGISRGSGFVAFSTPGE
KAB5541313.1 hypothetical protein DKX38_014287 [Salix brachista]3.7e-2148.59Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK---------------------------QGCN---------
        +AI  KALHDTFS FG+IL CKVA D SGQSKGYGF+QFD+E+ A K IEKLNGML+NDK                           QG N         
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK---------------------------QGCN---------

Query:  -----------------SIQVMRDPNGISRGSGFVAFSTPGE
                         S +VMRDP+GISRGSGFVAFSTP E
Subjt:  -----------------SIQVMRDPNGISRGSGFVAFSTPGE
KAB5568909.1 hypothetical protein DKX38_002702 [Salix brachista]4.3e-2251.59Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ-------------------------------------GC
        + I  KALHDTFS+FG+IL CKVA D+SGQSKGYGF+QFDNE+ A   I+KLNGML+NDKQ                                       
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ-------------------------------------GC

Query:  NSIQVMRDPNGISRGSGFVAFSTPGE
         S +VMRDP+GISRGSGFVAFSTP E
Subjt:  NSIQVMRDPNGISRGSGFVAFSTPGE
KAG7030974.1 Polyadenylate-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma]2.4e-2069.14Show/hide
Query:  NTSVSNTKRAVSHSVTR--IRAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        N  + N  + + H       +AI  KALHDTFSAFGSIL CKVALDSSGQSKGYGF+QFDNE+ ALK IEKLNGMLLNDKQ
Subjt:  NTSVSNTKRAVSHSVTR--IRAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
XP_022943038.1 polyadenylate-binding protein 2-like [Cucurbita moschata]9.0e-2086.89Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +AI  KALHDTFSAFGSIL CKVALDSSGQSKGYGF+QFDNE+ ALK IEKLNGMLLNDKQ
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
TrEMBL top hitse value%identityAlignment
A0A0A0L989 Polyadenylate-binding protein4.4e-2086.89Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +AI  KALHDTFSAFGSIL CKVALDSSGQSKGYGF+QFDNE+ ALK IEKLNGMLLNDKQ
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
A0A5N5K0R9 Uncharacterized protein1.0e-2456.69Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK------------QGCN------------------------
        +AI  KALHDTFSAFG+IL CKVA DSSGQSKGYGF+QFD+++ A K IEKLNGMLLNDK            QG N                        
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK------------QGCN------------------------

Query:  --SIQVMRDPNGISRGSGFVAFSTPGE
          S +VMRDPNGISRGSGFVAFSTP E
Subjt:  --SIQVMRDPNGISRGSGFVAFSTPGE
A0A5N5LEU5 Uncharacterized protein1.8e-2148.59Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK---------------------------QGCN---------
        +AI  KALHDTFS FG+IL CKVA D SGQSKGYGF+QFD+E+ A K IEKLNGML+NDK                           QG N         
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDK---------------------------QGCN---------

Query:  -----------------SIQVMRDPNGISRGSGFVAFSTPGE
                         S +VMRDP+GISRGSGFVAFSTP E
Subjt:  -----------------SIQVMRDPNGISRGSGFVAFSTPGE
A0A5N5NNY4 Uncharacterized protein2.1e-2251.59Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ-------------------------------------GC
        + I  KALHDTFS+FG+IL CKVA D+SGQSKGYGF+QFDNE+ A   I+KLNGML+NDKQ                                       
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ-------------------------------------GC

Query:  NSIQVMRDPNGISRGSGFVAFSTPGE
         S +VMRDP+GISRGSGFVAFSTP E
Subjt:  NSIQVMRDPNGISRGSGFVAFSTPGE
A0A6J1IR25 Polyadenylate-binding protein4.4e-2086.89Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +AI  KALHDTFSAFGSIL CKVALDSSGQSKGYGF+QFDNE+ ALK IEKLNGMLLNDKQ
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
SwissProt top hitse value%identityAlignment
O64380 Polyadenylate-binding protein 33.1e-1563.33Show/hide
Query:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +I +KAL +TFS+FG+IL CKVA+D +G+SKGYGF+QF+ E+ A   I+KLNGML+NDKQ
Subjt:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
P31209 Polyadenylate-binding protein, cytoplasmic and nuclear9.1e-1565Show/hide
Query:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        AI +KALHDTFSAFG IL CKVA+D  G +KGYGF+ FD+ + A   IE +NGMLLNDK+
Subjt:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
P42731 Polyadenylate-binding protein 21.0e-1875Show/hide
Query:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +I  KALHDTFS+FG+I+ CKVA+DSSGQSKGYGF+Q+ NE+ A K IEKLNGMLLNDKQ
Subjt:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
P42731 Polyadenylate-binding protein 24.7e-0376Show/hide
Query:  SIQVMRDPNGISRGSGFVAFSTPGE
        S +VMRDPNG S+GSGFVAF+TP E
Subjt:  SIQVMRDPNGISRGSGFVAFSTPGE
Q05196 Polyadenylate-binding protein 51.8e-1565Show/hide
Query:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +I +KAL++TFS+FG+IL CKVA+D  G+SKGYGF+QF+ E+ A   I+KLNGMLLNDKQ
Subjt:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
Q9FXA2 Polyadenylate-binding protein 85.2e-1861.04Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ---GCNSIQVMRDPNG
        ++I  KALH+TFSAFG IL CKVA+D SGQSKGYGF+Q+D ++ A   I+KLNGMLLNDKQ   G    ++ RDP+G
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ---GCNSIQVMRDPNG
Arabidopsis top hitse value%identityAlignment
AT1G49760.1 poly(A) binding protein 83.7e-1961.04Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ---GCNSIQVMRDPNG
        ++I  KALH+TFSAFG IL CKVA+D SGQSKGYGF+Q+D ++ A   I+KLNGMLLNDKQ   G    ++ RDP+G
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ---GCNSIQVMRDPNG
AT1G49760.2 poly(A) binding protein 83.7e-1961.04Show/hide
Query:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ---GCNSIQVMRDPNG
        ++I  KALH+TFSAFG IL CKVA+D SGQSKGYGF+Q+D ++ A   I+KLNGMLLNDKQ   G    ++ RDP+G
Subjt:  RAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ---GCNSIQVMRDPNG
AT1G71770.1 poly(A)-binding protein 51.3e-1665Show/hide
Query:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +I +KAL++TFS+FG+IL CKVA+D  G+SKGYGF+QF+ E+ A   I+KLNGMLLNDKQ
Subjt:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
AT1G71770.2 poly(A)-binding protein 51.3e-1665Show/hide
Query:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +I +KAL++TFS+FG+IL CKVA+D  G+SKGYGF+QF+ E+ A   I+KLNGMLLNDKQ
Subjt:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
AT4G34110.1 poly(A) binding protein 27.4e-2075Show/hide
Query:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
        +I  KALHDTFS+FG+I+ CKVA+DSSGQSKGYGF+Q+ NE+ A K IEKLNGMLLNDKQ
Subjt:  AIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQ
AT4G34110.1 poly(A) binding protein 23.3e-0476Show/hide
Query:  SIQVMRDPNGISRGSGFVAFSTPGE
        S +VMRDPNG S+GSGFVAF+TP E
Subjt:  SIQVMRDPNGISRGSGFVAFSTPGE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCTACATGGACGCCTTGGATTAATACGTCTGTATCGAATACAAAGCGGGCCGTATCACATAGTGTTACCAGGATAAGAGCAATTGGCGACAAAGCTTTACATGA
TACATTTTCTGCATTTGGTAGTATCCTCTATTGCAAAGTGGCTTTGGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTATACAATTTGACAATGAGAAGTTTGCTCTAA
AATTTATTGAGAAGTTGAATGGTATGTTGTTGAATGATAAACAAGGTTGTAATTCTATTCAAGTCATGCGTGATCCTAATGGTATAAGTAGAGGTTCTGGTTTTGTTGCA
TTCTCAACTCCTGGAGAGGGGGAAGCAAATTGCCCAACCCGTGGATGGTCTAAAACTTGCACAGTCAGGGAATCAATTTTGGGACTTCTTGGGGCCGTAAACAGAGCTAA
AACGGAGGATTTGAAGGCTGAAGCTAAAGGAGAAAATCGGAAATCAACCCATCGTTCGTGGGGATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCTACATGGACGCCTTGGATTAATACGTCTGTATCGAATACAAAGCGGGCCGTATCACATAGTGTTACCAGGATAAGAGCAATTGGCGACAAAGCTTTACATGA
TACATTTTCTGCATTTGGTAGTATCCTCTATTGCAAAGTGGCTTTGGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTATACAATTTGACAATGAGAAGTTTGCTCTAA
AATTTATTGAGAAGTTGAATGGTATGTTGTTGAATGATAAACAAGGTTGTAATTCTATTCAAGTCATGCGTGATCCTAATGGTATAAGTAGAGGTTCTGGTTTTGTTGCA
TTCTCAACTCCTGGAGAGGGGGAAGCAAATTGCCCAACCCGTGGATGGTCTAAAACTTGCACAGTCAGGGAATCAATTTTGGGACTTCTTGGGGCCGTAAACAGAGCTAA
AACGGAGGATTTGAAGGCTGAAGCTAAAGGAGAAAATCGGAAATCAACCCATCGTTCGTGGGGATCGTGA
Protein sequenceShow/hide protein sequence
MSPTWTPWINTSVSNTKRAVSHSVTRIRAIGDKALHDTFSAFGSILYCKVALDSSGQSKGYGFIQFDNEKFALKFIEKLNGMLLNDKQGCNSIQVMRDPNGISRGSGFVA
FSTPGEGEANCPTRGWSKTCTVRESILGLLGAVNRAKTEDLKAEAKGENRKSTHRSWGS