; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008497 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008497
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr9:23696429..23697649
RNA-Seq ExpressionLag0008497
SyntenyLag0008497
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]6.9e-6246.58Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L G N+  WK+ +NT+++++D+RFVL+EECP VP   A + V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG
        MFG +SYQ+ HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ                                          K KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG

Query:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE
        +   KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG +G   A     K   K  A KG CFHCN +GH KRNCP+YL EKK+ K+
Subjt:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]9.0e-6247.44Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L G N+  WK+ +NT+++++D+RFVL+EECP VP   A + V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG
        MFG +SYQ+ HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ                                          K KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG

Query:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE
        +   KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG +G KA   A +   KAK  A KG CFHCN +GH KRNCP+YL EKK+ K+
Subjt:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE

KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-6451.17Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+++ +++L  ++L G N+  WK+ +N +++++D++FVL+EECP VP   A Q V++ YERW K NEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG
        MFG +SYQ++HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ        KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG

Query:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN
         +G   A     K   K  A KG CFH N +GH KRNCP+YL EKK+ K+   +LN
Subjt:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-6451.17Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+++ +++L  ++L G N+  WK+ +N +++++D++FVL+EECP VP   A Q V++ YERW K NEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG
        MFG +SYQ++HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ        KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG

Query:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN
         +G   A     K   K  A KG CFH N +GH KRNCP+YL EKK+ K+   +LN
Subjt:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]6.9e-6246.58Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L G N+  WK+ +NT+++++D+RFVL+EECP VP   A + V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG
        MFG +SYQ+ HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ                                          K KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG

Query:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE
        +   KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG +G   A     K   K  A KG CFHCN +GH KRNCP+YL EKK+ K+
Subjt:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.4e-6247.44Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L G N+  WK+ +NT+++++D+RFVL+EECP VP   A + V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG
        MFG +SYQ+ HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ                                          K KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG

Query:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE
        +   KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG +G KA   A +   KAK  A KG CFHCN +GH KRNCP+YL EKK+ K+
Subjt:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE

A0A5A7UYX7 Gag/pol protein4.7e-6451.17Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+++ +++L  ++L G N+  WK+ +N +++++D++FVL+EECP VP   A Q V++ YERW K NEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG
        MFG +SYQ++HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ        KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG

Query:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN
         +G   A     K   K  A KG CFH N +GH KRNCP+YL EKK+ K+   +LN
Subjt:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN

A0A5D3BHG7 Gag/pol protein4.7e-6451.17Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+++ +++L  ++L G N+  WK+ +N +++++D++FVL+EECP VP   A Q V++ YERW K NEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG
        MFG +SYQ++HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ        KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKG

Query:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN
         +G   A     K   K  A KG CFH N +GH KRNCP+YL EKK+ K+   +LN
Subjt:  DKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLN

A0A5D3CPJ6 Gag/pol protein3.3e-6246.58Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L G N+  WK+ +NT+++++D+RFVL+EECP VP   A + V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG
        MFG +SYQ+ HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ                                          K KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG

Query:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE
        +   KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG +G   A     K   K  A KG CFHCN +GH KRNCP+YL EKK+ K+
Subjt:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE

A0A5D3CSZ6 Gag/pol protein3.3e-6246.58Show/hide
Query:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L G N+  WK+ +NT+++++D+RFVL+EECP VP   A + V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG
        MFG +SYQ+ HDALK  +NA++ EG  VREHVL+M+  FN+AE NG V+ E SQ                                          K KG
Subjt:  MFGLSSYQLHHDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQ------------------------------------------KSKG

Query:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE
        +   KGEANVA S + F +GS+SGTKS+P +S +K+ +K+KG +G   A     K   K  A KG CFHCN +GH KRNCP+YL EKK+ K+
Subjt:  KNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVADKGRCFHCNADGHLKRNCPRYLVEKKREKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCTATTATCTCCTTGCTTAAAAATGAACAACTTACTGGCGAAAACTTTCCACAATGGAAATCGAATCTTAATACCATTGTCGTGGTAGAGGATATAAGGTT
CGTCTTAATGGAGGAGTGTCCACCCGTTCCCCCTCGCACTGCCGCTCAGGCAGTAAAGGATGCTTATGAACGCTGGACTAAGGCCAATGAAAAGGTCAAAGTCTATATAC
TGGTCAGCTTGTCTGAAGTTTTGGCCAAGCGTTACGAGAACGTGGAAACTGCCAGGGAGATTATGAATTCCCTGCAGGAGATGTTTGGACTTTCGTCCTATCAGCTCCAC
CACGATGCCTTGAAGAATTCCTTCAATGCCAAGCTGCAGGAAGGTCAATTTGTTCGGGAACATGTCCTGGACATGATTAACAAGTTCAATATTGCTGAGGCAAATGGCGG
GGTAGTCTGCGAGCACAGTCAGAAAAGCAAGGGCAAAAATGTGGTTAAAGGAGAGGCCAATGTGGCCAATTCCAAAAAGAATTTCCTGAAGGGTTCATCCTCAGGGACTA
AATCTGTACCCCAGGCTTCTTCATCGAAGCAAATACAGAAGAGGAAGGGAGACAAGGGGAAGGCTCCTGCACAGGCTGTGCAAGGGAAGGGAAAGGCCAAGGTCGTGGCC
GACAAAGGCAGATGCTTCCACTGCAACGCAGATGGTCATTTGAAGCGCAACTGTCCCCGTTACCTTGTTGAGAAGAAGAGGGAAAAAGAAGTTTCTCCTTCCCTCAATTT
CCTCTCAGTTAAACGCTATCGACATATTGGTGAAACTCTCTGGCTTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCTATTATCTCCTTGCTTAAAAATGAACAACTTACTGGCGAAAACTTTCCACAATGGAAATCGAATCTTAATACCATTGTCGTGGTAGAGGATATAAGGTT
CGTCTTAATGGAGGAGTGTCCACCCGTTCCCCCTCGCACTGCCGCTCAGGCAGTAAAGGATGCTTATGAACGCTGGACTAAGGCCAATGAAAAGGTCAAAGTCTATATAC
TGGTCAGCTTGTCTGAAGTTTTGGCCAAGCGTTACGAGAACGTGGAAACTGCCAGGGAGATTATGAATTCCCTGCAGGAGATGTTTGGACTTTCGTCCTATCAGCTCCAC
CACGATGCCTTGAAGAATTCCTTCAATGCCAAGCTGCAGGAAGGTCAATTTGTTCGGGAACATGTCCTGGACATGATTAACAAGTTCAATATTGCTGAGGCAAATGGCGG
GGTAGTCTGCGAGCACAGTCAGAAAAGCAAGGGCAAAAATGTGGTTAAAGGAGAGGCCAATGTGGCCAATTCCAAAAAGAATTTCCTGAAGGGTTCATCCTCAGGGACTA
AATCTGTACCCCAGGCTTCTTCATCGAAGCAAATACAGAAGAGGAAGGGAGACAAGGGGAAGGCTCCTGCACAGGCTGTGCAAGGGAAGGGAAAGGCCAAGGTCGTGGCC
GACAAAGGCAGATGCTTCCACTGCAACGCAGATGGTCATTTGAAGCGCAACTGTCCCCGTTACCTTGTTGAGAAGAAGAGGGAAAAAGAAGTTTCTCCTTCCCTCAATTT
CCTCTCAGTTAAACGCTATCGACATATTGGTGAAACTCTCTGGCTTATTTAA
Protein sequenceShow/hide protein sequence
MSSSIISLLKNEQLTGENFPQWKSNLNTIVVVEDIRFVLMEECPPVPPRTAAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLSSYQLH
HDALKNSFNAKLQEGQFVREHVLDMINKFNIAEANGGVVCEHSQKSKGKNVVKGEANVANSKKNFLKGSSSGTKSVPQASSSKQIQKRKGDKGKAPAQAVQGKGKAKVVA
DKGRCFHCNADGHLKRNCPRYLVEKKREKEVSPSLNFLSVKRYRHIGETLWLI