CuGenDBv2

Gene ID	Lag0008508
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Photosystem II protein D1
Genome location	chr9:23901263..23902010
RNA-Seq Expression	Lag0008508
Synteny	Lag0008508
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR008543 - Uncharacterised protein family Ycf2 IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AXU40388.1 hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa]

3.4e-44

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNML GGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

AXU40562.1 hypothetical chloroplast RF2 [Gomphogyne cissiformis var. cissiformis]

3.4e-44

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNML GGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

5.2e-45

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNMLGGGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

QKX48518.1 hypothetical chloroplast RF21 [Luffa acutangula]

5.2e-45

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNMLGGGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

YP_009468904.1 hypothetical chloroplast RF2 [Gynostemma compressum]

4.4e-44

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNML GGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

2.1e-44

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNML GGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

A0A346TLZ9 Protein Ycf2

1.6e-44

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNML GGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

A0A346TMH3 Protein Ycf2

1.6e-44

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNML GGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

A0A6H0EQ61 Protein Ycf2

2.5e-45

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNMLGGGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

A0A7D4XZJ4 Protein Ycf2

2.5e-45

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEIW SASGGNMLGGGGPAYGVKSIRSKKKDWNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

SwissProt top hits

e value

%identity

Alignment

A4GYV4 Protein Ycf2

1.9e-42

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGD LEEI  SASGGNML GGGPAYGVKSIRSKKK +NIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

A6MM80 Protein Ycf2

1.9e-42

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEK+KSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEI  SASGGNML GGGPAYGVKSIRSKKK  NIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

B1NWJ3 Protein Ycf2

3.0e-43

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGD LEE+  SASGGNML GGGPAYGVKSIRSKKK WNIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

Q0G9F7 Protein Ycf2

9.6e-42

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  E EK+KSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGDSLEEI  SASGGNML GGGPAYGVKSIRSKKK  NIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

Q14F97 Protein Ycf2

4.3e-42

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN
        L  EFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGD LEEI  SASGGNML GGGPAYGVKSIRSKKK  NIN+IDLISIIPNPIN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

3.4e-42

95.45

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Query:  MHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETIKNESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLVAWLVV
        MHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRET +NESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFL AW VV
Subjt:  MHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETIKNESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLVAWLVV

ATCG00270.1 photosystem II reaction center protein D

1.4e-08

38.82

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Query:  MHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETIKNESANEGYRFG--QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLV
        ++PFHM+GVAGV G +L  A+HG+ V ++L  +    + AN    F   Q EETY++V A+ ++ ++     +F+N R LHFF++
Subjt:  MHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETIKNESANEGYRFG--QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLV

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.7e-39

84.47

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNIN---IIDLISIIPN
        L  EFEK+KSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGD LEEI    SGGNML GG PAYGVKSIRSKKKD  IN   IIDLISIIPN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNIN---IIDLISIIPN

Query:  PIN
        PIN
Subjt:  PIN

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.7e-39

84.47

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Query:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNIN---IIDLISIIPN
        L  EFEK+KSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLV LEQLGD LEEI    SGGNML GG PAYGVKSIRSKKKD  IN   IIDLISIIPN
Subjt:  LVVEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNIN---IIDLISIIPN

Query:  PIN
        PIN
Subjt:  PIN

Sequences

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CDS sequence

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ATGCACCCTTTCCACATGTTAGGTGTTGCTGGTGTATTTGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAAAAAA
TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA
ACTCTCGTTCTTTACATTTCTTCCTAGTTGCTTGGCTTGTAGTAGAGTTCGAAAAGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGAT
AGGTATCCCACATCTGAACTGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTACTCTAGAACAATTAGGAGATTCTCTAGAAGAAATATGGGATTCTGCTTCTGGTGG
CAACATGCTAGGGGGTGGGGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATATCATCGATCTCATAAGTATCATACCAAATCCCA
TCAATTGA

mRNA sequence

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Protein sequence

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MHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETIKNESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLVAWLVVEFEKVKSLMIPSYMIELRKLLD
RYPTSELNSFWLKNLFLVTLEQLGDSLEEIWDSASGGNMLGGGGPAYGVKSIRSKKKDWNINIIDLISIIPNPIN

Lag0008508 (gene) of Sponge gourd (AG-4) v1 genome