; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0008517 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008517
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr9:24249653..24250159
RNA-Seq ExpressionLag0008517
SyntenyLag0008517
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-3660.26Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+S+   EEENQC  ST T+  AF+ LS+STSKK R ST  FDRLK+I+DQ +R+M +L++K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK SV INTEGSL VKP  II TNP ++G ++  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3660.93Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST  +  AF+RLS+STSKK R ST  FDRLK+ +DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK SV INTEGSL VKP  II TNP ++G ++  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-3759.87Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC MST T+  AF+RLS+S SKK R ST  FDRLK+ +DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRSF
         K+ S + SR+KRK S+ INTEGSL VKP  II TNP ++G ++  DE++ F
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRSF

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-3760.93Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +Q+TSVFD IKP TTR SVFQR+SMA  EEENQC M T  Q  AF+RLS+STS K R ST  FDRLK+ +DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK SV INTEGSL VKP  II TNP ++G +Q  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3660.26Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST T+  AF+RLS+STSKK R ST  FDR+K+I+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK  V INTEGSL VKP  II TNP ++G ++  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein8.7e-3760.26Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+S+   EEENQC  ST T+  AF+ LS+STSKK R ST  FDRLK+I+DQ +R+M +L++K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK SV INTEGSL VKP  II TNP ++G ++  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

A0A5A7TQ06 Retrotransposon gag protein5.1e-3760.93Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST  +  AF+RLS+STSKK R ST  FDRLK+ +DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK SV INTEGSL VKP  II TNP ++G ++  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

A0A5A7U974 Retrotransposon gag protein3.9e-3759.87Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC MST T+  AF+RLS+S SKK R ST  FDRLK+ +DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRSF
         K+ S + SR+KRK S+ INTEGSL VKP  II TNP ++G ++  DE++ F
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRSF

A0A5A7VRG7 Retrotransposon gag protein3.9e-3760.93Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +Q+TSVFD IKP TTR SVFQR+SMA  EEENQC M T  Q  AF+RLS+STS K R ST  FDRLK+ +DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK SV INTEGSL VKP  II TNP ++G +Q  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

A0A5D3BLW3 Retrotransposon gag protein6.7e-3760.26Show/hide
Query:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST T+  AF+RLS+STSKK R ST  FDR+K+I+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLFDEVNSD

Query:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS
         K+ S + SRMKRK  V INTEGSL VKP  II TNP ++G ++  DE++S
Subjt:  KKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTTCCGCTGCGTCAGGACTTTTATTCCCTTCAGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAGTGAACAAAGGACTTCCGTCTTCGATCACATCAAGCC
TCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCAACCTTTAGCTTTCCAAAGACTAA
GTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAATAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGATGAAACTTTTC
GATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCATGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCT
CATTATCTTGACCAATCCTACAAGTCAAGGACCTGATCAAGACCATGATGAAGATAGGAGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCTTCCGCTGCGTCAGGACTTTTATTCCCTTCAGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAGTGAACAAAGGACTTCCGTCTTCGATCACATCAAGCC
TCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCAACCTTTAGCTTTCCAAAGACTAA
GTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAATAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGATGAAACTTTTC
GATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCATGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCT
CATTATCTTGACCAATCCTACAAGTCAAGGACCTGATCAAGACCATGATGAAGATAGGAGCTTTTAA
Protein sequenceShow/hide protein sequence
MRFRCVRTFIPFSIDVEEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTQPLAFQRLSVSTSKKSRSSTFVFDRLKVISDQPKRKMDNLEMKLF
DEVNSDKKLQSSIMSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDRSF