CuGenDBv2

Gene ID	Lag0008531
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Integrase
Genome location	chr9:24593782..24596986
RNA-Seq Expression	Lag0008531
Synteny	Lag0008531
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039947.1 integrase [Cucumis melo var. makuwa]

6.6e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

KAA0053129.1 integrase [Cucumis melo var. makuwa]

1.2e-144

74.2

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Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    DCWA +NG GNATM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEE-KNDEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+ KNDE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEE-KNDEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

KAA0060377.1 integrase [Cucumis melo var. makuwa]

6.6e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

TYJ95504.1 integrase [Cucumis melo var. makuwa]

6.6e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

TYK30104.1 integrase [Cucumis melo var. makuwa]

6.6e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UI36 Integrase

5.8e-145

74.2

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    DCWA +NG GNATM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEE-KNDEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+ KNDE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEE-KNDEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

A0A5A7UZJ8 Integrase

3.2e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

A0A5D3BQ81 Integrase

3.2e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

A0A5D3CLV1 Integrase

3.2e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

A0A5D3E3T2 Integrase

3.2e-143

73.4

Show/hide

Query:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD
        M+RLQAL+SEFDCIKMKETETIEEFFN IL IVNSLR+NGEE+GDQRV EKILRSM RKF+HIVVAIEESKDLSTLS+NSLMGSLQSH+LRLKQFDVNP+
Subjt:  MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPD

Query:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-
        EAFQMQTSFRG SRGRRGGHGRRGGGRNYD R+                                                    +CWA +NG GN TM 
Subjt:  EAFQMQTSFRGDSRGRRGGHGRRGGGRNYDKRN----------------------------------------------------DCWAPRNGDGNATM-

Query:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG
        MHKE+K  DE +LFLACS QD VVE TWYLDSGCSNHMTGNRSIF+TL+ES QSEVKT DNTRLQVK + DILVKTKK TKRV  VFYVPGLKHNLLSIG
Subjt:  MHKEEKN-DEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVVYVFYVPGLKHNLLSIG

Query:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC
        QLLQRG+KVSFEG  CAIKDQ GVL+AKVKMTANKMFPL FTYGQISCFSSILKD SWLWHFRYGHLNF+ LSYLC
Subjt:  QLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLC

SwissProt top hits

e value

%identity

Alignment

Q9Z1Q1 Nestin (Fragments)

2.3e-05

23.95

Show/hide

Query:  DQEDQQVSRSIIQEDQQANKPIQQIIKPTGRFNRSSNQQANRPIIQEDQQISRPIIKPIIREDQEVSRPIIQEDQQANRPIIQEDQQVNRPIIQEGQQAN
        ++EDQ+  R + +E+ +  KP+++  +          Q++     +EDQ+  RP+ K    EDQ V R + +E Q++     +EDQ+ +RP+ +E  +  
Subjt:  DQEDQQVSRSIIQEDQQANKPIQQIIKPTGRFNRSSNQQANRPIIQEDQQISRPIIKPIIREDQEVSRPIIQEDQQANRPIIQEDQQVNRPIIQEGQQAN

Query:  RPIIKKINKSAGRSSKRINKLTSRSDRSSSQSTDQEDQQVSRPI-IQKDQQTNRLIIQEDQQ-VSKP------IIKPIIREDQQVSRPII----------
        +P+ ++         +    L  +  + S  S ++EDQ+  RP+  ++DQ   RL+ +E Q+ +S P        +P+ +E+ Q+   +I          
Subjt:  RPIIKKINKSAGRSSKRINKLTSRSDRSSSQSTDQEDQQVSRPI-IQKDQQTNRLIIQEDQQ-VSKP------IIKPIIREDQQVSRPII----------

Query:  --QEDQQANRPIIQEDQQ----VTTGQSKRSLSRQADHPRRSSSQQADPRDHQPSKPIIQETQQPNRPIIQEDHQANRPIQEIINLASRSSKKLNKPTQE
          +EDQ+ +RP+ +E+ Q    +   + + SLS   +   + + +  +  + +P KP+ +E Q+  R I +ED ++   ++E      R  K L +   E
Subjt:  --QEDQQANRPIIQEDQQ----VTTGQSKRSLSRQADHPRRSSSQQADPRDHQPSKPIIQETQQPNRPIIQEDHQANRPIQEIINLASRSSKKLNKPTQE

Query:  DQEARDQSL
           + D++L
Subjt:  DQEARDQSL

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

1.8e-05

22.38

Show/hide

Query:  VRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPDE
        V ++ L+ + + +KM + E+   + +  L I+  L     E  D  + + +  ++   F  +   +EE  D+  ++  SL          ++ F     E
Subjt:  VRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPDE

Query:  AFQMQTSFRGDSRGRRGGHGRRGGG---RNYDKRNDCWAPRNGDGNATMMHKEEKNDEDVLFLACSAQDEVVEST-----WYLDSGCSNHMTGNRSIFIT
        +   +  F      R      +  G   +N   + DC    + D       KEEK DE V+         +   T     W +      +MT     F T
Subjt:  AFQMQTSFRGDSRGRRGGHGRRGGG---RNYDKRNDCWAPRNGDGNATMMHKEEKNDEDVLFLACSAQDEVVEST-----WYLDSGCSNHMTGNRSIFIT

Query:  LEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVV-YVFYVPGLKHNLLSIGQLLQRGMKVS--FEGVECAIKDQ
        L+ + ++ V T D T L V+ + D+ ++ K+  K+ +  V +VPGL  N+LS G+++ +   +S   +G EC + D+
Subjt:  LEESLQSEVKTCDNTRLQVKCRCDILVKTKKDTKRVV-YVFYVPGLKHNLLSIGQLLQRGMKVS--FEGVECAIKDQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTAAGACTACAAGCTCTCAAATCTGAATTTGATTGCATTAAGATGAAAGAGACCGAAACTATTGAAGAGTTTTTCAATCATATTCTTGCGATTGTCAACAGTTTGAG
AACAAATGGAGAAGAATTGGGTGATCAAAGAGTTGATGAAAAGATTCTTAGAAGTATGTTAAGAAAGTTTAAGCATATTGTCGTTGCAATTGAAGAATCAAAAGATTTAT
CTACACTATCAGTAAATAGCTTGATGGGTTCTCTTCAATCCCATGACCTTAGATTGAAACAATTTGATGTTAATCCCGATGAAGCATTTCAGATGCAAACTTCATTCAGA
GGCGATTCTCGTGGAAGACGTGGTGGTCATGGCAGACGAGGAGGTGGAAGAAACTATGATAAAAGAAATGATTGTTGGGCACCGAGAAATGGAGATGGAAATGCCACCAT
GATGCATAAAGAGGAGAAAAATGATGAAGATGTTCTATTTCTTGCATGTAGTGCTCAAGACGAAGTTGTAGAGTCTACATGGTATCTTGATAGTGGTTGTAGTAACCACA
TGACAGGAAATAGAAGTATATTTATTACTTTGGAGGAATCTCTTCAAAGTGAAGTGAAAACTTGTGATAATACAAGATTGCAAGTCAAATGTCGATGTGATATTCTCGTT
AAGACCAAGAAAGACACAAAACGAGTTGTGTATGTGTTCTATGTTCCAGGTCTGAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAGCGAGGTATGAAAGTTTCATT
TGAAGGTGTTGAGTGTGCAATCAAAGATCAGACTGGTGTTCTTCTTGCTAAGGTAAAAATGACTGCTAATAAGATGTTTCCTCTTAAATTTACTTATGGTCAAATCTCTT
GTTTTAGCAGCATATTGAAGGATTCATCCTGGCTTTGGCATTTTCGATATGGTCACTTGAATTTCAGATTACTATCATATTTGTGTAATGTCGCAACGACATCGCGACGC
GGAGCGGCCGACTCCTTTCTTGGGTTTTTAAGAAGAAAATTGGAGTCGCCACCAATCATTGAAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGATTAGC
CGATCAAGAAGATCAACAAGTCAGCAGGTCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATTCAACAGATCATCAA
ATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAATCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAAGAAGTCAGCAGACCGATCATCCAAGAA
GATCAACAGGCCAACAGGCCAATCATCCAAGAAGATCAACAAGTTAACAGACCGATCATCCAAGAAGGTCAACAAGCCAACAGGCCGATCATCAAGAAGATCAACAAGTC
AGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCCAAA
AAGATCAACAAACCAACAGGCTGATCATCCAAGAAGATCAACAAGTCAGCAAACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAA
GAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACAGGCCAATCCAAGAGATCATTAAGCCGGCAGGCCGATCATCCAAGAAGATCATCAAG
CCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAACTCAACAACCGAACAGGCCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCC
AAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCTCAACAAACCAACCCAAGAAGATCAAGAAGCTAGAGACCAAAGTTTATATATTTAA

mRNA sequence

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Protein sequence

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MVRLQALKSEFDCIKMKETETIEEFFNHILAIVNSLRTNGEELGDQRVDEKILRSMLRKFKHIVVAIEESKDLSTLSVNSLMGSLQSHDLRLKQFDVNPDEAFQMQTSFR
GDSRGRRGGHGRRGGGRNYDKRNDCWAPRNGDGNATMMHKEEKNDEDVLFLACSAQDEVVESTWYLDSGCSNHMTGNRSIFITLEESLQSEVKTCDNTRLQVKCRCDILV
KTKKDTKRVVYVFYVPGLKHNLLSIGQLLQRGMKVSFEGVECAIKDQTGVLLAKVKMTANKMFPLKFTYGQISCFSSILKDSSWLWHFRYGHLNFRLLSYLCNVATTSRR
GAADSFLGFLRRKLESPPIIEARGREGRVQSILPRLADQEDQQVSRSIIQEDQQANKPIQQIIKPTGRFNRSSNQQANRPIIQEDQQISRPIIKPIIREDQEVSRPIIQE
DQQANRPIIQEDQQVNRPIIQEGQQANRPIIKKINKSAGRSSKRINKLTSRSDRSSSQSTDQEDQQVSRPIIQKDQQTNRLIIQEDQQVSKPIIKPIIREDQQVSRPIIQ
EDQQANRPIIQEDQQVTTGQSKRSLSRQADHPRRSSSQQADPRDHQPSKPIIQETQQPNRPIIQEDHQANRPIQEIINLASRSSKKLNKPTQEDQEARDQSLYI

Lag0008531 (gene) of Sponge gourd (AG-4) v1 genome