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Lag0008534 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008534
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionChromosome partition protein Smc
Genome locationchr9:24630932..24631525
RNA-Seq ExpressionLag0008534
SyntenyLag0008534
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036949.1 girdin-like [Cucumis melo var. makuwa]1.2e-0422.16Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ
        L+ +    QAT+ S+++ +   ++      +L+ +L   I  R   I ++E +N +L +T++ L L + +   +  E+      L+    SL+ +L   Q
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ

Query:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        +++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R V++RA++ A+ A  L       QP++ ++ +FL  I   L ++G F+
Subjt:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

KAA0062685.1 girdin-like [Cucumis melo var. makuwa]7.3e-0523.2Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ
        L+ +    QAT+ S+N+ +   ++      E + +L   I  R   I ++E +N +L +T++ L L       ++ E   +   L+  V+SL+ +L   Q
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ

Query:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        +++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R V++RA+  A+ A  L       QP++ ++ +FL  I   L ++G F+
Subjt:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

TYK18656.1 girdin-like [Cucumis melo var. makuwa]9.6e-0523.2Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ
        L+ +    QAT+ S ++ +   ++      EL+ +L   I  R   I ++E +N +L +T+++L L +  R ++  E+      L+  V SL+ +L   Q
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ

Query:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        +++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R +++RA+  A+ A  L        P++ ++ KFL  I   L ++G+F+
Subjt:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

TYK23632.1 girdin-like [Cucumis melo var. makuwa]1.1e-0524.1Show/hide
Query:  RLRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKY
        RL+ +    QAT+ S+++ +   ++      EL+ +L   I  R   I ++E +N +L +T++ L L +  R ++  E+      L+  V SL+ +L   
Subjt:  RLRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKY

Query:  QDATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        Q+++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R V++RA+  A+ A  L       QP++ ++ +FL  I   L ++G+F+
Subjt:  QDATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.7e-0624.48Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ
        L+ +  + QAT++S+++ +   ++      EL+ +L+  I  R   I ++E  N +L +T++ L +       ++ E   D   L+    SL+ +L  +Q
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ

Query:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQ
        ++++R++++Y  LK  Y ++  D+   R +  TL  + +  +  +R V+RRA+  A+ A  L       +P+S ++ +FL  I   L ++G+
Subjt:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQ

TrEMBL top hitse value%identityAlignment
A0A4R6LPZ7 Chromosome partition protein Smc1.8e-0424.21Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIR-------EDQLGELINDNMGLRESVQSLN
        L R N V +  ++ ++D+ L+ Q+  + L   +K  +D I  +   I +++EKN +L   INDL+  L I+       E QL EL  D   + E   +  
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIR-------EDQLGELINDNMGLRESVQSLN

Query:  VRLGKYQDATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKI
         +L + + + +  +++    +E+   +S D   +      LQ K + + +  + + +R +EL  +   L K V   +  +K + + L KI
Subjt:  VRLGKYQDATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKI

A0A5A7T6E2 Girdin-like6.1e-0522.16Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ
        L+ +    QAT+ S+++ +   ++      +L+ +L   I  R   I ++E +N +L +T++ L L + +   +  E+      L+    SL+ +L   Q
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ

Query:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        +++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R V++RA++ A+ A  L       QP++ ++ +FL  I   L ++G F+
Subjt:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

A0A5A7V9X6 Girdin-like3.5e-0523.2Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ
        L+ +    QAT+ S+N+ +   ++      E + +L   I  R   I ++E +N +L +T++ L L       ++ E   +   L+  V+SL+ +L   Q
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ

Query:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        +++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R V++RA+  A+ A  L       QP++ ++ +FL  I   L ++G F+
Subjt:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

A0A5D3D533 Girdin-like4.6e-0523.2Show/hide
Query:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ
        L+ +    QAT+ S ++ +   ++      EL+ +L   I  R   I ++E +N +L +T+++L L +  R ++  E+      L+  V SL+ +L   Q
Subjt:  LRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQ

Query:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        +++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R +++RA+  A+ A  L        P++ ++ KFL  I   L ++G+F+
Subjt:  DATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

A0A5D3DJ95 Girdin-like5.5e-0624.1Show/hide
Query:  RLRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKY
        RL+ +    QAT+ S+++ +   ++      EL+ +L   I  R   I ++E +N +L +T++ L L +  R ++  E+      L+  V SL+ +L   
Subjt:  RLRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKY

Query:  QDATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY
        Q+++ R+ ++Y  L   Y ++  D+     +   L  + +  +  +R V++RA+  A+ A  L       QP++ ++ +FL  I   L ++G+F+
Subjt:  QDATDRLMKDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTCCATGAGTTGATGAA
AGAGCTCGAAGATTGCATTAGTTGGAGGAACCAAACGATTACTGAGGTAGAGGAAAAAAATGGAACGCTATGTCGAACAATTAACGACCTGCAATTAACACTCAAGATTA
GAGAAGATCAACTAGGGGAGCTTATCAACGACAACATGGGTCTAAGAGAGTCCGTTCAGTCACTCAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGACAGATTAATG
AAGGACTATACCTATCTAAAGGAGCAGTACGACAGATTGAGCGATGATTTCGGGTTTGTGAGACATAATCATGCGACACTGCAAAGTAAAACGGAACATATGCTCACTCA
GATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCGAAAGATGCATGTACTCTCTCTAAAGTCGTAGCACCTACACAACCGAATAGCAAGAATGTGCTCAAGTTTCTGG
GAAAAATTCTTATAAGTTTAGAGTATTGGGGGCAATTTTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTCCATGAGTTGATGAA
AGAGCTCGAAGATTGCATTAGTTGGAGGAACCAAACGATTACTGAGGTAGAGGAAAAAAATGGAACGCTATGTCGAACAATTAACGACCTGCAATTAACACTCAAGATTA
GAGAAGATCAACTAGGGGAGCTTATCAACGACAACATGGGTCTAAGAGAGTCCGTTCAGTCACTCAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGACAGATTAATG
AAGGACTATACCTATCTAAAGGAGCAGTACGACAGATTGAGCGATGATTTCGGGTTTGTGAGACATAATCATGCGACACTGCAAAGTAAAACGGAACATATGCTCACTCA
GATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCGAAAGATGCATGTACTCTCTCTAAAGTCGTAGCACCTACACAACCGAATAGCAAGAATGTGCTCAAGTTTCTGG
GAAAAATTCTTATAAGTTTAGAGTATTGGGGGCAATTTTATTAA
Protein sequenceShow/hide protein sequence
MHRLRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISWRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNMGLRESVQSLNVRLGKYQDATDRLM
KDYTYLKEQYDRLSDDFGFVRHNHATLQSKTEHMLTQIRRVTRRADELAKDACTLSKVVAPTQPNSKNVLKFLGKILISLEYWGQFY