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Lag0008538 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008538
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSUPPRESSOR OF ABI3-5
Genome locationchr9:24703521..24705558
RNA-Seq ExpressionLag0008538
SyntenyLag0008538
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR041591 - OCRE domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046226.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa]4.0e-7193.92Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        Q+NGGQEQGG  VAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

XP_011655136.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucumis sativus]6.9e-7193.24Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        QSNGGQEQGG  VA+QSHGSAPQSGFVWD+ASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

XP_016902976.1 PREDICTED: SUPPRESSOR OF ABI3-5 [Cucumis melo]4.0e-7193.92Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        Q+NGGQEQGG  VAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

XP_031741241.1 SUPPRESSOR OF ABI3-5 isoform X2 [Cucumis sativus]6.9e-7193.24Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        QSNGGQEQGG  VA+QSHGSAPQSGFVWD+ASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

XP_031741242.1 SUPPRESSOR OF ABI3-5 isoform X3 [Cucumis sativus]6.9e-7193.24Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        QSNGGQEQGG  VA+QSHGSAPQSGFVWD+ASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

TrEMBL top hitse value%identityAlignment
A0A0A0KR81 Uncharacterized protein3.3e-7193.24Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        QSNGGQEQGG  VA+QSHGSAPQSGFVWD+ASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

A0A1S4E414 SUPPRESSOR OF ABI3-52.0e-7193.92Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        Q+NGGQEQGG  VAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

A0A5D3D622 RNA-binding protein 5-B isoform X22.0e-7193.92Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILGPGS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDD+
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        Q+NGGQEQGG  VAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

A0A6J1GW06 SUPPRESSOR OF ABI3-5 isoform X15.7e-7193.92Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILG GS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDDK
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        QSNGGQE GG EVA+QSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

A0A6J1JH15 SUPPRESSOR OF ABI3-5 isoform X15.7e-7193.92Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHFHSVEDA KALDATNGTTLEKNGQILRVAYAKSILG GS P GSSQSSSLAA AIEAATFAQQYDAVGWAPKEYNPDDK
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        QSNGGQE GG EVA+QSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

SwissProt top hitse value%identityAlignment
F4JCU0 SUPPRESSOR OF ABI3-54.2e-5572.97Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHF+SVEDA KAL+ATN T LE+NG+ILRVAYAKS+ G G+     S S++LAA AIEAATF+QQYD VGWAPKEYN  +K
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        Q+ GGQ QG  E+  Q   SAPQSG+VWDEASGYYYDAASG+YYDGN+
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

P30352 Serine/arginine-rich splicing factor 22.8e-0644.59Show/hide
Query:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYGSS
        D+ + RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+         S  GP  R YGSS
Subjt:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYGSS

Q01130 Serine/arginine-rich splicing factor 21.8e-0543.06Show/hide
Query:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYG
        D+ + RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+         S  GP  R YG
Subjt:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYG

Q3MHR5 Serine/arginine-rich splicing factor 21.8e-0543.06Show/hide
Query:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYG
        D+ + RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+         S  GP  R YG
Subjt:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYG

Q62093 Serine/arginine-rich splicing factor 21.8e-0543.06Show/hide
Query:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYG
        D+ + RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+         S  GP  R YG
Subjt:  DLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAK---------SILGPGSRPYG

Arabidopsis top hitse value%identityAlignment
AT3G54230.1 suppressor of abi3-53.0e-5672.97Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHF+SVEDA KAL+ATN T LE+NG+ILRVAYAKS+ G G+     S S++LAA AIEAATF+QQYD VGWAPKEYN  +K
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        Q+ GGQ QG  E+  Q   SAPQSG+VWDEASGYYYDAASG+YYDGN+
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

AT3G54230.2 suppressor of abi3-53.0e-5672.97Show/hide
Query:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK
        +DLRLVRDKFTHVSRGFAFVHF+SVEDA KAL+ATN T LE+NG+ILRVAYAKS+ G G+     S S++LAA AIEAATF+QQYD VGWAPKEYN  +K
Subjt:  QDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDAVGWAPKEYNPDDK

Query:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT
        Q+ GGQ QG  E+  Q   SAPQSG+VWDEASGYYYDAASG+YYDGN+
Subjt:  QSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNT

AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.0e-0541.82Show/hide
Query:  RLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGP
        RL++D+ T   +GF F+ F S +DA KAL A NG  +  NG+++ V  AK +  P
Subjt:  RLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATTTAGGAGTTCGATACGACAAGAACCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGATCTCCGTTTGGTTAGAGACAAATTCACTCATGTTTC
TAGAGGGTTTGCATTTGTTCATTTCCATTCGGTGGAGGATGCTTGCAAAGCTCTTGATGCCACAAATGGCACAACCCTCGAGAAGAATGGACAAATTTTACGAGTAGCAT
ATGCTAAGAGCATTCTTGGTCCAGGATCAAGACCGTATGGATCTTCACAGTCTAGCAGCCTTGCAGCTACTGCAATTGAGGCTGCAACATTTGCCCAACAGTATGATGCT
GTTGGATGGGCACCAAAGGAATACAACCCAGACGACAAACAATCCAATGGTGGCCAGGAGCAAGGAGGTAATGAGGTGGCAGTTCAAAGTCATGGTTCTGCTCCACAATC
CGGCTTTGTGTGGGATGAAGCGTCAGGATACTATTATGATGCTGCTTCTGGGTTCTACTATGACGGAAATACAGAAAAGATGCTAGGATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATTTAGGAGTTCGATACGACAAGAACCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGATCTCCGTTTGGTTAGAGACAAATTCACTCATGTTTC
TAGAGGGTTTGCATTTGTTCATTTCCATTCGGTGGAGGATGCTTGCAAAGCTCTTGATGCCACAAATGGCACAACCCTCGAGAAGAATGGACAAATTTTACGAGTAGCAT
ATGCTAAGAGCATTCTTGGTCCAGGATCAAGACCGTATGGATCTTCACAGTCTAGCAGCCTTGCAGCTACTGCAATTGAGGCTGCAACATTTGCCCAACAGTATGATGCT
GTTGGATGGGCACCAAAGGAATACAACCCAGACGACAAACAATCCAATGGTGGCCAGGAGCAAGGAGGTAATGAGGTGGCAGTTCAAAGTCATGGTTCTGCTCCACAATC
CGGCTTTGTGTGGGATGAAGCGTCAGGATACTATTATGATGCTGCTTCTGGGTTCTACTATGACGGAAATACAGAAAAGATGCTAGGATGGTAG
Protein sequenceShow/hide protein sequence
MRNLGVRYDKNRGGVGVCLVYAHQDLRLVRDKFTHVSRGFAFVHFHSVEDACKALDATNGTTLEKNGQILRVAYAKSILGPGSRPYGSSQSSSLAATAIEAATFAQQYDA
VGWAPKEYNPDDKQSNGGQEQGGNEVAVQSHGSAPQSGFVWDEASGYYYDAASGFYYDGNTEKMLGW