CuGenDBv2

Gene ID	Lag0008558
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	zf-RVT domain-containing protein
Genome location	chr9:25342258..25342953
RNA-Seq Expression	Lag0008558
Synteny	Lag0008558
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

BBN69274.1 TatD related DNase [Prunus dulcis]

4.0e-26

35.24

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Query:  RRNLTDLETEEWIALVSNLQPMTI-NSCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL++ E  E + L+  L  + +  S  D   W++E   SFS KS   +L S+T S     Y  IW  + P K++FF+W  ++  INT D +Q+R P M
Subjt:  RRNLTDLETEEWIALVSNLQPMTI-NSCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKE-KDIGYF
         LSPS C  C  +AE+  HLF +C Y+ K W  M    G  +  P     LLS+ L          IL  C + A FWN+W+ERN RIF+      +   
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKE-KDIGYF

Query:  IDFTSLLAVSWSKLSPPFCNYDLTTLV
         D     A  W+ +S  F +Y  +T++
Subjt:  IDFTSLLAVSWSKLSPPFCNYDLTTLV

TQD85214.1 hypothetical protein C1H46_029232 [Malus baccata]

4.7e-27

38.34

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Query:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL ++E EE  +L+  ++ + ++ S  DN  W+LE    F+ KS    LS++    +   Y+ IW  + P KVK  +W V+   +NT DK+QKR+P M
Subjt:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD
         LSP  C LC +  ES  H+F +C Y+ + W   F +    W  P+      LLS            K LW C V A FWN+WLERN RIF+D
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD

TQD93576.1 hypothetical protein C1H46_020784 [Malus baccata]

1.4e-26

36.79

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Query:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL + E EE   L+  ++ + ++ S +DN  W LE  + F+ KS   +LS++    +   Y+ IW  + P KVK  +W V+   +NT D++Q+RS ++
Subjt:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD
         LSP  C LC +  ES  H+F +C Y  + W   F +    W  P+      LLS            K+LW C V A FWN+WLERN RIF+D
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD

TQD97296.1 hypothetical protein C1H46_017137 [Malus baccata]

3.6e-27

34.2

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Query:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL + E EE   L+  ++ + ++ S +DN  W LE    F+ KS   +LS++    +   Y+ IW  + P KVK  +W V+   +NT D++Q+RS ++
Subjt:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGY
         LSP  C LC ++ E   H+F +C Y  + W   F +    W  P+      LLS            K LW C V A FWN+WLERN RIF+D    +G 
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGY

Query:  FIDF--TSLLAVSWSKLSPPFCNYDLTTLVY
         + +      A  W+ +S  F NY L+ L++
Subjt:  FIDF--TSLLAVSWSKLSPPFCNYDLTTLVY

XP_028960603.1 uncharacterized protein LOC114825746 [Malus domestica]

2.1e-27

33.33

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Query:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL + E EE   L+  ++ + ++ S +DN  W +E    F+ KS   +LS++    + + ++ IW  + P KVK  +W  +   +NT D++Q+RSP++
Subjt:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGY
         LSP  C LC +  ES  H+F +C Y  + W   F +    W  P+      LLS            K LW C V A FWN+WLERN RIF+D    +G 
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGY

Query:  FIDF--TSLLAVSWSKLSPPFCNYDLTTLVY
         + +      A  W+ +S  F NY ++ L++
Subjt:  FIDF--TSLLAVSWSKLSPPFCNYDLTTLVY

TrEMBL top hits

e value

%identity

Alignment

A0A540LFH9 zf-RVT domain-containing protein

2.3e-27

38.34

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Query:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL ++E EE  +L+  ++ + ++ S  DN  W+LE    F+ KS    LS++    +   Y+ IW  + P KVK  +W V+   +NT DK+QKR+P M
Subjt:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD
         LSP  C LC +  ES  H+F +C Y+ + W   F +    W  P+      LLS            K LW C V A FWN+WLERN RIF+D
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD

A0A540M4H0 zf-RVT domain-containing protein

6.6e-27

36.79

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Query:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL + E EE   L+  ++ + ++ S +DN  W LE  + F+ KS   +LS++    +   Y+ IW  + P KVK  +W V+   +NT D++Q+RS ++
Subjt:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD
         LSP  C LC +  ES  H+F +C Y  + W   F +    W  P+      LLS            K+LW C V A FWN+WLERN RIF+D
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKD

A0A540MEX9 zf-RVT domain-containing protein

1.7e-27

34.2

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Query:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL + E EE   L+  ++ + ++ S +DN  W LE    F+ KS   +LS++    +   Y+ IW  + P KVK  +W V+   +NT D++Q+RS ++
Subjt:  RRNLTDLETEEWIALVSNLQPMTIN-SCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGY
         LSP  C LC ++ E   H+F +C Y  + W   F +    W  P+      LLS            K LW C V A FWN+WLERN RIF+D    +G 
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFW--SFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGY

Query:  FIDF--TSLLAVSWSKLSPPFCNYDLTTLVY
         + +      A  W+ +S  F NY L+ L++
Subjt:  FIDF--TSLLAVSWSKLSPPFCNYDLTTLVY

A0A5H2XQW2 TatD related DNase

1.9e-26

35.24

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Query:  RRNLTDLETEEWIALVSNLQPMTI-NSCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL++ E  E + L+  L  + +  S  D   W++E   SFS KS   +L S+T S     Y  IW  + P K++FF+W  ++  INT D +Q+R P M
Subjt:  RRNLTDLETEEWIALVSNLQPMTI-NSCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKE-KDIGYF
         LSPS C  C  +AE+  HLF +C Y+ K W  M    G  +  P     LLS+ L          IL  C + A FWN+W+ERN RIF+      +   
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKE-KDIGYF

Query:  IDFTSLLAVSWSKLSPPFCNYDLTTLV
         D     A  W+ +S  F +Y  +T++
Subjt:  IDFTSLLAVSWSKLSPPFCNYDLTTLV

M5XV38 zf-RVT domain-containing protein

4.3e-26

35.22

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Query:  RRNLTDLETEEWIALVSNLQPMTI-NSCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM
        RRNL++ E  E + L+  L  + +  S  D   W++E   SFS KS   +L S+T       ++ IW  + P K++FF+W  ++  INT D +Q+R P M
Subjt:  RRNLTDLETEEWIALVSNLQPMTI-NSCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWM

Query:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGYFI
         LSPS C LC  +AE+  HLF +C Y+ + W  M    G  +  P     LLS+ L          IL  C V A FWN+W+ERN RIF   +  IG  +
Subjt:  ILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGYFI

Query:  ----DFTSLLAVSWSKLSPPFCNYDLTTLV
            D     A  W+ +S  F +Y  +T++
Subjt:  ----DFTSLLAVSWSKLSPPFCNYDLTTLV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.6e-09

29.21

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Query:  IALVSNLQPMTINSCSDNWGW-DLERDKSFSSK----------SLSKYLSSSTPSAH-AELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWMI
        I LV  L P T+    D  G  D + D SF  K          S +K   +  P  H    Y  +W   +  K  F  W V+ + ++T D+L+    W +
Subjt:  IALVSNLQPMTINSCSDNWGW-DLERDKSFSSK----------SLSKYLSSSTPSAH-AELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWMI

Query:  LSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERN-------GRIFKDKEK
          P+ C LC S  ES  HLF  C +    W F        FP P  ++  L  LL      N   I+ L   +A+ + +W ERN        R+F    K
Subjt:  LSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERN-------GRIFKDKEK

Query:  DI
        DI
Subjt:  DI

AT3G25270.1 Ribonuclease H-like superfamily protein

2.3e-08

28.47

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Query:  PSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWMILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLL
        P   AE+   IW  +   K+K FLW++    + T D L++R    I +   C  C  + E+S HLF +C YA + W              G  +     L
Subjt:  PSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWMILSPSCCPLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLL

Query:  LLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDK
        LL     N +  L+   +    W LW  RN  +F+ K
Subjt:  LLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDK

Sequences

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CDS sequence

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ATGATCTACCCAAGGAGAAATCTCACTGATCTCGAGACTGAAGAATGGATAGCATTAGTATCCAATTTACAACCAATGACTATTAATAGTTGTAGTGACAACTGGGGATG
GGATTTAGAGAGGGACAAATCTTTTTCCTCTAAATCCCTTTCTAAGTATTTATCATCCTCCACACCGAGTGCTCATGCTGAACTTTACACCCATATTTGGGCCGGCCGAT
ACCCCAAAAAGGTCAAATTCTTCCTATGGGAAGTTAGCCACTCTTGTATCAACACCCACGACAAGCTCCAAAAAAGATCTCCTTGGATGATTCTATCTCCATCATGCTGT
CCTCTTTGTTATAGTGATGCAGAATCTTCGATTCACCTATTCAGCAATTGTCTTTATGCCTCGAAGTTCTGGAGCTTCATGCAATCAACTTTTGGATGGGCCTTTCCTAG
ACCGGGTGATATTCTATCCCTTCTATCTCTCTTACTTTTGGGACATCCATTTACAAATGACAAGAAGATCCTTTGGTTATGTCATGTTCGTGCTTTCTTTTGGAATCTTT
GGTTGGAGCGTAATGGTCGCATTTTCAAGGACAAGGAAAAAGACATCGGCTACTTCATAGATTTCACTTCTCTTTTAGCAGTTTCTTGGAGCAAATTGTCTCCCCCTTTT
TGTAATTATGACCTCACTACCCTCGTTTATCAATGA

mRNA sequence

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Protein sequence

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MIYPRRNLTDLETEEWIALVSNLQPMTINSCSDNWGWDLERDKSFSSKSLSKYLSSSTPSAHAELYTHIWAGRYPKKVKFFLWEVSHSCINTHDKLQKRSPWMILSPSCC
PLCYSDAESSIHLFSNCLYASKFWSFMQSTFGWAFPRPGDILSLLSLLLLGHPFTNDKKILWLCHVRAFFWNLWLERNGRIFKDKEKDIGYFIDFTSLLAVSWSKLSPPF
CNYDLTTLVYQ

Lag0008558 (gene) of Sponge gourd (AG-4) v1 genome