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Lag0008595 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008595
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr9:26108041..26109446
RNA-Seq ExpressionLag0008595
SyntenyLag0008595
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035697.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-0548.57Show/hide
Query:  KTKCLHIEEKS-TFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGS
        K  C+ I +K       F  LK+T+DQ +++M  L+ K F E N+D K+HS +LSRMKRK SV IN EGS
Subjt:  KTKCLHIEEKS-TFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGS

KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]2.7e-0843.3Show/hide
Query:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL
        M  ++LH  F F KTK    ++       F  LK+T DQ +R+M +L+VK F E N D K+HS + SRMKRK SV IN EG+ S   + V     LL
Subjt:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.3e-0644.12Show/hide
Query:  LKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALLRFATVILLLQVRRFIIAPPPNRGFFIVVPFLQVRR
        LK+T DQ +R+M +L+ K F E N D K+HS + SRMKRK SV IN EG+ S  L+ V     LL       +LQ R F    P    FFI    LQ+R 
Subjt:  LKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALLRFATVILLLQVRRFIIAPPPNRGFFIVVPFLQVRR

Query:  LT
        L+
Subjt:  LT

TYK19591.1 hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa]3.3e-0646.75Show/hide
Query:  EEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL
        ++ STF   F CLK+T++Q +R+M +L+VK F E N+D ++HS + SRMKRK SV+IN +G+ S  L+ V     LL
Subjt:  EEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL

TYK30948.1 hypothetical protein E5676_scaffold455G001730 [Cucumis melo var. makuwa]7.8e-0843.01Show/hide
Query:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSA
        M  V+ HS F F K K LHIEE       F  LK+T+DQ +R+M  L+ K F E N+D K++S + S MKRK  V IN + + SSS   ++++
Subjt:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSA

TrEMBL top hitse value%identityAlignment
A0A5A7UC34 Uncharacterized protein1.3e-0843.3Show/hide
Query:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL
        M  ++LH  F F KTK    ++       F  LK+T DQ +R+M +L+VK F E N D K+HS + SRMKRK SV IN EG+ S   + V     LL
Subjt:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL

A0A5A7V7A0 Retrotransposon gag protein3.5e-0644.12Show/hide
Query:  LKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALLRFATVILLLQVRRFIIAPPPNRGFFIVVPFLQVRR
        LK+T DQ +R+M +L+ K F E N D K+HS + SRMKRK SV IN EG+ S  L+ V     LL       +LQ R F    P    FFI    LQ+R 
Subjt:  LKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALLRFATVILLLQVRRFIIAPPPNRGFFIVVPFLQVRR

Query:  LT
        L+
Subjt:  LT

A0A5D3D7Q8 Uncharacterized protein1.6e-0646.75Show/hide
Query:  EEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL
        ++ STF   F CLK+T++Q +R+M +L+VK F E N+D ++HS + SRMKRK SV+IN +G+ S  L+ V     LL
Subjt:  EEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL

A0A5D3E4T1 Retrotransposon gag protein1.3e-0548.57Show/hide
Query:  KTKCLHIEEKS-TFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGS
        K  C+ I +K       F  LK+T+DQ +++M  L+ K F E N+D K+HS +LSRMKRK SV IN EGS
Subjt:  KTKCLHIEEKS-TFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGS

A0A5D3E580 Uncharacterized protein3.8e-0843.01Show/hide
Query:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSA
        M  V+ HS F F K K LHIEE       F  LK+T+DQ +R+M  L+ K F E N+D K++S + S MKRK  V IN + + SSS   ++++
Subjt:  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGCGTCCACCTTCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAATCGACCTTCAACATCTGTTTTTATTGCCTCAAAGTAACAAG
CGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAGCTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTCT
CTGTTCTCATAAATATAGAAGGTTCTCATTCATCAAGTTTGAAGAGGGTTCTCTCCGCTATTGCTCTGCTAAGGTTTGCCACTGTGATTCTCCTTCTCCAAGTTCGAAGG
TTCATCATTGCCCCTCCTCCAAATCGAGGGTTCTTCATTGTGGTTCCCTTTCTCCAAGTTCGAAGGTTGACGGTTGATGACTTTGGTCTCGCTTCATCTCCAAAGTTGAC
GGCGACTGACATCATTGCTTCATCTTCAAAGTTAACGACGACTGACGGTGTTGCTTCATCTTTAAAGTTGGCAGCGGTTGACGACCCTCTTCATTTTAAAAGTTGGCAGT
GGTTGACGACCCCTCTTCATTTTAAAAGTTGGTGGCAGTTGATGGCGTCGCTTCATCTTAAAAGTTGGCCTCGCTTCATTTTCAAAGTTGGCGGCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGCGTCCACCTTCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAATCGACCTTCAACATCTGTTTTTATTGCCTCAAAGTAACAAG
CGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAGCTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTCT
CTGTTCTCATAAATATAGAAGGTTCTCATTCATCAAGTTTGAAGAGGGTTCTCTCCGCTATTGCTCTGCTAAGGTTTGCCACTGTGATTCTCCTTCTCCAAGTTCGAAGG
TTCATCATTGCCCCTCCTCCAAATCGAGGGTTCTTCATTGTGGTTCCCTTTCTCCAAGTTCGAAGGTTGACGGTTGATGACTTTGGTCTCGCTTCATCTCCAAAGTTGAC
GGCGACTGACATCATTGCTTCATCTTCAAAGTTAACGACGACTGACGGTGTTGCTTCATCTTTAAAGTTGGCAGCGGTTGACGACCCTCTTCATTTTAAAAGTTGGCAGT
GGTTGACGACCCCTCTTCATTTTAAAAGTTGGTGGCAGTTGATGGCGTCGCTTCATCTTAAAAGTTGGCCTCGCTTCATTTTCAAAGTTGGCGGCGATTGA
Protein sequenceShow/hide protein sequence
MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALLRFATVILLLQVRR
FIIAPPPNRGFFIVVPFLQVRRLTVDDFGLASSPKLTATDIIASSSKLTTTDGVASSLKLAAVDDPLHFKSWQWLTTPLHFKSWWQLMASLHLKSWPRFIFKVGGD