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Lag0008596 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008596
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:26110810..26111226
RNA-Seq ExpressionLag0008596
SyntenyLag0008596
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051086.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-1052.11Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I+ VM+T+  T   RM +++++INILMKA+EE+D +I  LK+ IE++N+VESSHTH +KN DKGK ++Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-1047.89Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I++VM+T+  T E+RM E+++++N+LMKA+EE+D +I  LK+ IE+++ +ESSHTH++KN +KGK ++Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

KAA0060505.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-0952.11Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I++VM+T   T E RMVE++E++N+LMK +EE+D +I  LK+ IE+++  ESSH H VKN DKGK V+Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-0935.34Show/hide
Query:  PTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDE-KFLVKYNPLFK-------------LDADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQI
        P  HSCS E++  +D     +++ I  Q +   +   ++K NP                   +I++VM+T   T E RM E+++++N+LMK +EE+D +I
Subjt:  PTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDE-KFLVKYNPLFK-------------LDADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQI

Query:  KHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
          LK+ IE+++  ESSH H VKN DKGK V+Q+
Subjt:  KHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-1050.7Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I++VM+T+  T E RM E+++++N+LMKA+EE+D +I  LK+ IE+ +  ESSHTH +KN DKGKT++Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

TrEMBL top hitse value%identityAlignment
A0A5A7U5H1 Ty3-gypsy retrotransposon protein7.5e-1049.3Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I++VM+T+  T E+RM E+++++N+LMKA+EEKD +I  LK+ IE+++  ESSHTH +KN +KGK ++Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

A0A5A7U9H0 Ty3-gypsy retrotransposon protein2.6e-1047.89Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I++VM+T+  T E+RM E+++++N+LMKA+EE+D +I  LK+ IE+++ +ESSHTH++KN +KGK ++Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

A0A5A7UA64 Ty3-gypsy retrotransposon protein2.0e-1052.11Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I+ VM+T+  T   RM +++++INILMKA+EE+D +I  LK+ IE++N+VESSHTH +KN DKGK ++Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

A0A5D3BX77 Retrotransposon gag protein5.7e-1035.34Show/hide
Query:  PTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDE-KFLVKYNPLFK-------------LDADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQI
        P  HSCS E++  +D     +++ I  Q +   +   ++K NP                   +I++VM+T   T E RM E+++++N+LMK +EE+D +I
Subjt:  PTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDE-KFLVKYNPLFK-------------LDADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQI

Query:  KHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
          LK+ IE+++  ESSH H VKN DKGK V+Q+
Subjt:  KHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

A0A5D3C857 Ty3-gypsy retrotransposon protein1.2e-1050.7Show/hide
Query:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD
        +I++VM+T+  T E RM E+++++N+LMKA+EE+D +I  LK+ IE+ +  ESSHTH +KN DKGKT++Q+
Subjt:  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTAT
TATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGA
CTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAG
ATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTAT
TATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGA
CTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAG
ATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG
Protein sequenceShow/hide protein sequence
MSFKTSSMIVVMSNFYTGPTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDEKFLVKYNPLFKLDADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQ
IENQNIVESSHTHVVKNQDKGKTVVQDD