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Lag0008635 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008635
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr9:26936545..26937039
RNA-Seq ExpressionLag0008635
SyntenyLag0008635
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]4.1e-0952.22Show/hide
Query:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ
        S+ST   P  PT+ P P +    P PQ +  SP  PN  P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   PP+FLD QQ
Subjt:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]4.1e-0951.11Show/hide
Query:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ
        SSST   P  PT+ P P +    P PQ +  SP      P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   PP+FLD QQ
Subjt:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.2e-1256.34Show/hide
Query:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL
        PQ + P+P F+PN     YP+L QPL++KL++TN  LWKNQLLN ++ANGL  F++G  P P KFLDD QL
Subjt:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL

RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]8.8e-1254.93Show/hide
Query:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL
        PQ + P+P F+PN     YP+L QPL++KL++TN  LWKNQL+N ++ANGL  F++G  P P KFLDD QL
Subjt:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]3.1e-1768.83Show/hide
Query:  FPRPQTPSHFPPQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL
        FP P TP +F  QP  P+PF+ NP+PTLPQPL+VKLND NFLLWKNQLLNAV+ANGL G+LDG++  PP+FLD  QL
Subjt:  FPRPQTPSHFPPQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE12.5e-1256.34Show/hide
Query:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL
        PQ + P+P F+PN     YP+L QPL++KL++TN  LWKNQLLN ++ANGL  F++G  P P KFLDD QL
Subjt:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL

A0A438KNU0 Uncharacterized protein4.3e-1254.93Show/hide
Query:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL
        PQ + P+P F+PN     YP+L QPL++KL++TN  LWKNQL+N ++ANGL  F++G  P P KFLDD QL
Subjt:  PQPVTPSP-FTPN----PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL

A0A6J1DQX7 uncharacterized protein LOC1110223151.5e-1768.83Show/hide
Query:  FPRPQTPSHFPPQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL
        FP P TP +F  QP  P+PF+ NP+PTLPQPL+VKLND NFLLWKNQLLNAV+ANGL G+LDG++  PP+FLD  QL
Subjt:  FPRPQTPSHFPPQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL

A0A7J0EGI5 Uncharacterized protein2.0e-0952.22Show/hide
Query:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ
        S+ST   P  PT+ P P +    P PQ +  SP  PN  P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   PP+FLD QQ
Subjt:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ

A0A7J0GPN0 UBX domain-containing protein2.0e-0951.11Show/hide
Query:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ
        SSST   P  PT+ P P +    P PQ +  SP      P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   PP+FLD QQ
Subjt:  SSSTFFQPYYPTNFPRPQTPSHFP-PQPVTPSPFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACTGAAGCTTCCTCTTCTTCTTCATCATCCGGTGCTCTTACTCCGCCGATTGTTACTCCATCAACACCTAATGCAACTCCAGTGGTGACTCCGATTACACAGCG
GCCTCAGACTCCCTTTCAACCTCGACCCTCTGTTCCAACTCCTCAAAATCGTCCTACTGTTCCTCCTACTCAACCTCCATATAATCCTTATCAACCCCACCCATTTTACC
CTTCGTCATCAACGTTCTTCCAACCTTATTACCCAACTAATTTTCCTCGTCCACAAACCCCCTCGCATTTCCCTCCTCAACCTGTAACTCCATCACCTTTTACCCCAAAT
CCTTACCCTACCCTGCCCCAACCCCTCAGTGTCAAGCTAAACGACACTAATTTCTTGTTGTGGAAAAATCAGCTGCTGAACGCTGTCCTTGCCAATGGCCTCCACGGTTT
CCTTGATGGTTCTGTTCCTGCTCCGCCCAAATTTCTCGATGATCAACAGCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACTGAAGCTTCCTCTTCTTCTTCATCATCCGGTGCTCTTACTCCGCCGATTGTTACTCCATCAACACCTAATGCAACTCCAGTGGTGACTCCGATTACACAGCG
GCCTCAGACTCCCTTTCAACCTCGACCCTCTGTTCCAACTCCTCAAAATCGTCCTACTGTTCCTCCTACTCAACCTCCATATAATCCTTATCAACCCCACCCATTTTACC
CTTCGTCATCAACGTTCTTCCAACCTTATTACCCAACTAATTTTCCTCGTCCACAAACCCCCTCGCATTTCCCTCCTCAACCTGTAACTCCATCACCTTTTACCCCAAAT
CCTTACCCTACCCTGCCCCAACCCCTCAGTGTCAAGCTAAACGACACTAATTTCTTGTTGTGGAAAAATCAGCTGCTGAACGCTGTCCTTGCCAATGGCCTCCACGGTTT
CCTTGATGGTTCTGTTCCTGCTCCGCCCAAATTTCTCGATGATCAACAGCTGTAA
Protein sequenceShow/hide protein sequence
MSTEASSSSSSSGALTPPIVTPSTPNATPVVTPITQRPQTPFQPRPSVPTPQNRPTVPPTQPPYNPYQPHPFYPSSSTFFQPYYPTNFPRPQTPSHFPPQPVTPSPFTPN
PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLHGFLDGSVPAPPKFLDDQQL