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Lag0008644 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008644
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr9:27184415..27185952
RNA-Seq ExpressionLag0008644
SyntenyLag0008644
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]2.0e-11594.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

TYK04936.1 F15O4.13 [Cucumis melo var. makuwa]2.0e-11594.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

TYK11702.1 F15O4.13 [Cucumis melo var. makuwa]2.0e-11594.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.0e-11594.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.0e-11594.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

TrEMBL top hitse value%identityAlignment
A0A5D3BWE8 F15O4.139.6e-11694.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

A0A5D3C3D3 F15O4.139.6e-11694.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

A0A5D3CK70 F15O4.139.6e-11694.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

A0A5D3DGA7 Transposon Ty3-I Gag-Pol polyprotein9.6e-11694.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

A0A5D3DRJ1 F15O4.139.6e-11694.69Show/hide
Query:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK
        MSHDGEEV EVIDPNVAILQAIQGMLELMRE+RQERRAQQQREVRPFQEDEGMFDL+AHERQLGGRGNVRGRGRNNLANVMQPRR+ERVH DRDG VKLK
Subjt:  MSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLK

Query:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK
        IPPFTGT DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKS+RRRKEEDPIETWEELKEAM+KRFVPKHYERDLKTKLQSLRQGTK
Subjt:  IPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEELKEAMKKRFVPKHYERDLKTKLQSLRQGTK

Query:  SVAEYYREMETLIGRARIREDKEDTI
        SVAEYYREMETLIGRARI+ED+EDT+
Subjt:  SVAEYYREMETLIGRARIREDKEDTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTACGAGTGACCATCATAGACTCTAAGTTTGATCTAAGAGTGATTCATCTTCTAGCTAAACTCTTGGTTGGAATCGTTCGAGCCTTGGGCAACATCCTTTGGCC
GACTCTAGAGTGTGGAAAGGTCCTTGTTACTAAATACAAAATGTCGCATGATGGAGAAGAAGTTTCGGAAGTGATAGATCCAAATGTTGCTATTCTTCAAGCAATCCAAG
GTATGTTGGAATTGATGAGGGAAGATAGACAAGAAAGGAGGGCACAACAACAAAGGGAAGTACGACCATTCCAAGAAGATGAAGGTATGTTTGACTTAGATGCACATGAA
AGACAGCTTGGAGGAAGAGGAAATGTGAGAGGGAGAGGAAGAAATAACCTCGCCAATGTGATGCAACCTAGGAGGGTGGAAAGAGTGCATGTAGATAGAGATGGAAGAGT
TAAACTCAAGATCCCACCTTTTACTGGAACGACGGATTCAGAGACATATTTGCAATGGGAAAGGAAGATAGAACATGTGTTTGATTGCAACACATTTAGTGAGAATAAGA
AGATGAAACTTGCCATTGCCGAATTCACCAATTATGCCTCTGAATGGTATCATTATCTCAAGTCCAAAAGAAGGAGGAAAGAGGAGGATCCAATAGAAACTTGGGAAGAA
CTCAAAGAAGCCATGAAAAAAAGGTTTGTTCCTAAACATTATGAAAGAGATTTGAAAACTAAATTGCAATCTTTGAGGCAAGGTACAAAAAGTGTTGCTGAATATTATCG
AGAGATGGAGACTTTGATTGGAAGAGCAAGAATCCGAGAAGATAAGGAAGACACCATTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGATCTACGAGTGACCATCATAGACTCTAAGTTTGATCTAAGAGTGATTCATCTTCTAGCTAAACTCTTGGTTGGAATCGTTCGAGCCTTGGGCAACATCCTTTGGCC
GACTCTAGAGTGTGGAAAGGTCCTTGTTACTAAATACAAAATGTCGCATGATGGAGAAGAAGTTTCGGAAGTGATAGATCCAAATGTTGCTATTCTTCAAGCAATCCAAG
GTATGTTGGAATTGATGAGGGAAGATAGACAAGAAAGGAGGGCACAACAACAAAGGGAAGTACGACCATTCCAAGAAGATGAAGGTATGTTTGACTTAGATGCACATGAA
AGACAGCTTGGAGGAAGAGGAAATGTGAGAGGGAGAGGAAGAAATAACCTCGCCAATGTGATGCAACCTAGGAGGGTGGAAAGAGTGCATGTAGATAGAGATGGAAGAGT
TAAACTCAAGATCCCACCTTTTACTGGAACGACGGATTCAGAGACATATTTGCAATGGGAAAGGAAGATAGAACATGTGTTTGATTGCAACACATTTAGTGAGAATAAGA
AGATGAAACTTGCCATTGCCGAATTCACCAATTATGCCTCTGAATGGTATCATTATCTCAAGTCCAAAAGAAGGAGGAAAGAGGAGGATCCAATAGAAACTTGGGAAGAA
CTCAAAGAAGCCATGAAAAAAAGGTTTGTTCCTAAACATTATGAAAGAGATTTGAAAACTAAATTGCAATCTTTGAGGCAAGGTACAAAAAGTGTTGCTGAATATTATCG
AGAGATGGAGACTTTGATTGGAAGAGCAAGAATCCGAGAAGATAAGGAAGACACCATTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTT
AG
Protein sequenceShow/hide protein sequence
MDLRVTIIDSKFDLRVIHLLAKLLVGIVRALGNILWPTLECGKVLVTKYKMSHDGEEVSEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHE
RQLGGRGNVRGRGRNNLANVMQPRRVERVHVDRDGRVKLKIPPFTGTTDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSKRRRKEEDPIETWEE
LKEAMKKRFVPKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIREDKEDTIVATSSRRGAADILSWVF