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Lag0008656 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008656
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationchr9:27356100..27356497
RNA-Seq ExpressionLag0008656
SyntenyLag0008656
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146901.1 upstream activation factor subunit spp27-like [Momordica charantia]1.0e-2185.71Show/hide
Query:  KSKEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        +SKEK  PS DTAAAA PK KIKREMTR  GILKVAQVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQ
Subjt:  KSKEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

XP_022924718.1 upstream activation factor subunit spp27-like [Cucurbita moschata]2.8e-1979.41Show/hide
Query:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        KEK PP  D AAAA PK K +REMTR  G+LKV QVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQ
Subjt:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

XP_022980440.1 protein TRI1-like [Cucurbita maxima]1.5e-2082.35Show/hide
Query:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        KEK PP  D AAAA PK K+KREMTRS G LKV QVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQ
Subjt:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

XP_023527131.1 upstream activation factor subunit spp27-like [Cucurbita pepo subsp. pepo]2.8e-1979.41Show/hide
Query:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        KEK PP  D AAAA PK K +REMTR  G+LKV QVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQ
Subjt:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

XP_038877222.1 upstream activation factor subunit UAF30 [Benincasa hispida]1.1e-1878.87Show/hide
Query:  KSKEKAPPSFDTA-AAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        KSK K PP+ DTA  +A PK KIKRE+TR  GILKV QVSPALSNFLGV EASR DAVKQIWSYIKLHNLQ
Subjt:  KSKEKAPPSFDTA-AAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

TrEMBL top hitse value%identityAlignment
A0A6J1D0R8 upstream activation factor subunit spp27-like5.1e-2285.71Show/hide
Query:  KSKEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        +SKEK  PS DTAAAA PK KIKREMTR  GILKVAQVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQ
Subjt:  KSKEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

A0A6J1EDA2 upstream activation factor subunit spp27-like1.4e-1979.41Show/hide
Query:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        KEK PP  D AAAA PK K +REMTR  G+LKV QVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQ
Subjt:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

A0A6J1GFF6 upstream activation factor subunit UAF30-like2.6e-1869.14Show/hide
Query:  MKSKEKAPPSF-DTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQTGKFPMKLF
        +KSKEKAPPS  D  +AA PK KIKR  TRS GILKV +VSPALSNFLGV E SRT+AVKQIWSYIKL+NLQ      ++F
Subjt:  MKSKEKAPPSF-DTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQTGKFPMKLF

A0A6J1IKQ4 protein TRI1-like2.2e-1767.07Show/hide
Query:  TMKSKEKAPPSF-DTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQTGKFPMKLF
        T KSKEKAPPS  D  +AA PK  IKR  TR  GILKV +VSPALSNFLGV E SRT+AVKQIWSYIKL+NLQ      ++F
Subjt:  TMKSKEKAPPSF-DTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQTGKFPMKLF

A0A6J1IWB1 protein TRI1-like7.3e-2182.35Show/hide
Query:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        KEK PP  D AAAA PK K+KREMTRS G LKV QVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQ
Subjt:  KEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.9e-0550Show/hide
Query:  GILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        GI K   VS  L++F G  E +R  A+K++W Y+KLHNLQ
Subjt:  GILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

AT1G49520.1 SWIB complex BAF60b domain-containing protein5.0e-0646.51Show/hide
Query:  RSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        R  G  K+ Q+SP L  FLG  + +RT+ VK++W+YI+ H+LQ
Subjt:  RSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

AT2G35605.1 SWIB/MDM2 domain superfamily protein5.4e-0856.14Show/hide
Query:  AAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        AA+    K  R+ T   GILKV  VS  L+NF+G  E SRT AVK+IW YIKL+NLQ
Subjt:  AAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.5e-1046.75Show/hide
Query:  PSFDTAAAAVPKTKIK-----REMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQTGKFPMKLF
        P+    A A PK K K     ++  RS GI KV  VSP L+ FLG  E SRTDA+K IW+YIK H+LQ      ++F
Subjt:  PSFDTAAAAVPKTKIK-----REMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQTGKFPMKLF

AT4G34290.1 SWIB/MDM2 domain superfamily protein6.6e-0646.55Show/hide
Query:  AAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ
        AA++ P T  K    R  GI+K   VS A+ + +GV E  RT A+K+IW+YIK H+LQ
Subjt:  AAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATGAAATCGAAGGAGAAGGCCCCACCGAGCTTCGATACTGCTGCTGCAGCCGTGCCCAAGACGAAAATCAAAAGGGAAATGACTCGATCGATGGGGATTTTGAA
GGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTAGGAGTATTGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGA
CTGGTAAATTCCCTATGAAGCTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCATGAAATCGAAGGAGAAGGCCCCACCGAGCTTCGATACTGCTGCTGCAGCCGTGCCCAAGACGAAAATCAAAAGGGAAATGACTCGATCGATGGGGATTTTGAA
GGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTAGGAGTATTGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGA
CTGGTAAATTCCCTATGAAGCTGTTTTGA
Protein sequenceShow/hide protein sequence
MTMKSKEKAPPSFDTAAAAVPKTKIKREMTRSMGILKVAQVSPALSNFLGVLEASRTDAVKQIWSYIKLHNLQTGKFPMKLF