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Lag0008661 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008661
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionE3 ubiquitin-protein ligase RHF1A-like
Genome locationchr9:27487241..27487546
RNA-Seq ExpressionLag0008661
SyntenyLag0008661
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TKY54034.1 E3 ubiquitin-protein ligase RHF1A [Spatholobus suberectus]9.2e-0454.72Show/hide
Query:  MADFNASTSSAEKPTLS-TTTVMFSGNVDDPSEDACSICLEPFTSQDPATLRC
        MA+F +S SS   P +S  +T   S   DD SEDACSICLEPF++ DPAT+ C
Subjt:  MADFNASTSSAEKPTLS-TTTVMFSGNVDDPSEDACSICLEPFTSQDPATLRC
XP_022138018.1 E3 ubiquitin-protein ligase RHF1A-like [Momordica charantia]1.3e-0563.46Show/hide
Query:  MADFNASTSSAEKPTLSTTTVMFSGNVDDPSED--ACSICLEPFTSQDPATL
        MADFNA T +    ++ST  V+FSG VDDPSED  +CSICLEPF SQDPA++
Subjt:  MADFNASTSSAEKPTLSTTTVMFSGNVDDPSED--ACSICLEPFTSQDPATL
TrEMBL top hitse value%identityAlignment
A0A6J1C8W9 E3 ubiquitin-protein ligase RHF1A-like6.2e-0663.46Show/hide
Query:  MADFNASTSSAEKPTLSTTTVMFSGNVDDPSED--ACSICLEPFTSQDPATL
        MADFNA T +    ++ST  V+FSG VDDPSED  +CSICLEPF SQDPA++
Subjt:  MADFNASTSSAEKPTLSTTTVMFSGNVDDPSED--ACSICLEPFTSQDPATL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G14220.1 RING-H2 group F1A1.2e-0442.31Show/hide
Query:  FNASTSSAEKPTL-----STTTVMFSGNVDDPSEDACSICLEPFTSQDPATL
        FN S +S   P +     S++ ++ + + D+ ++DACSICLEPFT QDP+T+
Subjt:  FNASTSSAEKPTL-----STTTVMFSGNVDDPSEDACSICLEPFTSQDPATL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATTTCAATGCCTCCACTTCTTCTGCGGAGAAGCCTACACTCTCAACTACGACGGTCATGTTTTCTGGCAATGTTGATGATCCTTCCGAAGATGCTTGCAGTAT
CTGCCTTGAACCTTTCACCTCTCAAGATCCTGCCACTCTGCGTTGTGATTTGCGATTTAGTGTCGAGCTTCATGTCGGACTATTAGCTCTTAGGGCTCCTTGTTTTACTT
CCCTGTTCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATTTCAATGCCTCCACTTCTTCTGCGGAGAAGCCTACACTCTCAACTACGACGGTCATGTTTTCTGGCAATGTTGATGATCCTTCCGAAGATGCTTGCAGTAT
CTGCCTTGAACCTTTCACCTCTCAAGATCCTGCCACTCTGCGTTGTGATTTGCGATTTAGTGTCGAGCTTCATGTCGGACTATTAGCTCTTAGGGCTCCTTGTTTTACTT
CCCTGTTCCGGTGA
Protein sequenceShow/hide protein sequence
MADFNASTSSAEKPTLSTTTVMFSGNVDDPSEDACSICLEPFTSQDPATLRCDLRFSVELHVGLLALRAPCFTSLFR