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Lag0008702 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008702
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:28369318..28369790
RNA-Seq ExpressionLag0008702
SyntenyLag0008702
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU17164.1 hypothetical protein TSUD_177940 [Trifolium subterraneum]1.1e-0434.25Show/hide
Query:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVGRASHLIWAIWQTTN
        LPT   + +R  + N+NC +C  ++EDE+HIF+ C +             ++S+   VGR + L+W IWQ  N
Subjt:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVGRASHLIWAIWQTTN

GAU22779.1 hypothetical protein TSUD_142180 [Trifolium subterraneum]5.6e-0428.26Show/hide
Query:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKM----------------GMMELQGILGRPY---QNSYREEVGRASHLIWAIWQTTN
        LPT   + KR  +  +NC++C  ++EDE+HIF++C +                 M +   ++ R +    N   + VGR + L+W IW+  N
Subjt:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKM----------------GMMELQGILGRPY---QNSYREEVGRASHLIWAIWQTTN

TrEMBL top hitse value%identityAlignment
A0A2N9FR17 Reverse transcriptase domain-containing protein1.2e-0432.32Show/hide
Query:  DALPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILG-----RPYQNSYREE----------VGRASH------LIWAIWQTTNQIK
        +ALPT LN++KR       C +CG+K ED +H  W CK    +LQ +       +P +NS   +          +GR S       + WA+WQ  N+I+
Subjt:  DALPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILG-----RPYQNSYREE----------VGRASH------LIWAIWQTTNQIK

A0A2N9GIC4 Reverse transcriptase domain-containing protein7.9e-0437.7Show/hide
Query:  DALPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVG
        +ALPT LN++KR       C +CG K ED +H  W CK     LQ +  +  QN+    +G
Subjt:  DALPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVG

A0A2Z6M5M0 Reverse transcriptase domain-containing protein5.5e-0534.25Show/hide
Query:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVGRASHLIWAIWQTTN
        LPT   + +R  + N+NC +C  ++EDE+HIF+ C +             ++S+   VGR + L+W IWQ  N
Subjt:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVGRASHLIWAIWQTTN

A0A2Z6MAQ9 Reverse transcriptase domain-containing protein6.1e-0426.28Show/hide
Query:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVGRASHLIWAIWQTTNQIKHSNFRKDTSQYFKDIMIKMDNYQS
        LPT   + +R  + N+NC +C  ++EDE+HIF++C +          R         VGR + L+W IWQ  N    ++  +   Q  + +    +++ S
Subjt:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVGRASHLIWAIWQTTNQIKHSNFRKDTSQYFKDIMIKMDNYQS

Query:  QRKYQAKSSAKNLQSHGC-WK------LMCNLLIASV
          K Q+ S ++  ++    WK      + CN+ +A V
Subjt:  QRKYQAKSSAKNLQSHGC-WK------LMCNLLIASV

A0A2Z6NF49 Uncharacterized protein7.9e-0423.88Show/hide
Query:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMME--LQGILGRPYQNSYREE-----------------VGRASHLIWAIWQTTNQIKHSNFR
        LPT   + +R  K N+NC +C  ++EDE+HIF+ C +        G+    + ++Y++                  VGR + L+W IWQ  N    ++  
Subjt:  LPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMME--LQGILGRPYQNSYREE-----------------VGRASHLIWAIWQTTNQIKHSNFR

Query:  KDTSQYFKDIMIKMDNYQSQRKYQAKSSAKNLQS
        +   Q  +       ++ S  K Q+ S ++  ++
Subjt:  KDTSQYFKDIMIKMDNYQSQRKYQAKSSAKNLQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATGCTCTACCTACTCTACTTAATATTCGGAAAAGGGATGCGAAAACTAATGTCAACTGTTATATGTGCGGGAGGAAGGTGGAGGACGAAGTGCATATCTTCTG
GCAGTGCAAGATGGGGATGATGGAGCTTCAAGGAATATTGGGAAGGCCTTATCAAAATTCTTATAGAGAAGAGGTTGGGAGAGCAAGTCATCTAATTTGGGCAATATGGC
AAACAACGAACCAGATAAAGCATTCAAATTTCAGGAAAGACACAAGCCAGTATTTCAAAGACATCATGATTAAAATGGACAACTATCAGAGTCAACGCAAGTATCAGGCG
AAGAGCTCTGCGAAGAACCTCCAGAGTCATGGGTGTTGGAAGCTGATGTGCAATTTGCTTATCGCAAGTGTACGGGTCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGATGCTCTACCTACTCTACTTAATATTCGGAAAAGGGATGCGAAAACTAATGTCAACTGTTATATGTGCGGGAGGAAGGTGGAGGACGAAGTGCATATCTTCTG
GCAGTGCAAGATGGGGATGATGGAGCTTCAAGGAATATTGGGAAGGCCTTATCAAAATTCTTATAGAGAAGAGGTTGGGAGAGCAAGTCATCTAATTTGGGCAATATGGC
AAACAACGAACCAGATAAAGCATTCAAATTTCAGGAAAGACACAAGCCAGTATTTCAAAGACATCATGATTAAAATGGACAACTATCAGAGTCAACGCAAGTATCAGGCG
AAGAGCTCTGCGAAGAACCTCCAGAGTCATGGGTGTTGGAAGCTGATGTGCAATTTGCTTATCGCAAGTGTACGGGTCAAGTAA
Protein sequenceShow/hide protein sequence
MNDALPTLLNIRKRDAKTNVNCYMCGRKVEDEVHIFWQCKMGMMELQGILGRPYQNSYREEVGRASHLIWAIWQTTNQIKHSNFRKDTSQYFKDIMIKMDNYQSQRKYQA
KSSAKNLQSHGCWKLMCNLLIASVRVK