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Lag0008721 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0008721
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr9:28658227..28658598
RNA-Seq ExpressionLag0008721
SyntenyLag0008721
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037445.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-2449.58Show/hide
Query:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR
        PK FR IS     YKIIA+ L NR+K   P TI+  QLAF+   QI +  LMANE ++ W  +K +G ++KLD+EKAFD ++W+F+D +LE K F  +WR
Subjt:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR

Query:  HGIKGCTSSANYSIITNGR
          I+GC S+  YS+I NGR
Subjt:  HGIKGCTSSANYSIITNGR

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-2552.1Show/hide
Query:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR
        PK FR IS     YKIIA+ L NR+K   P TI+E QLAF+   QI +  LMANE ++ W  +K +G ++KLD+EKAFD ++W+F+D +LE K F I+WR
Subjt:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR

Query:  HGIKGCTSSANYSIITNGR
          I+GC S+  YSII NGR
Subjt:  HGIKGCTSSANYSIITNGR

KAA0047098.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-2450.42Show/hide
Query:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR
        PK FR IS     YKIIA+ L NR+K   P TI+  QLAF+   QI +  LMANE ++ W  +K +G ++KLD+EKAFD ++W+F+D +LE K F  +WR
Subjt:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR

Query:  HGIKGCTSSANYSIITNGR
          IKGC S+  YS+I NGR
Subjt:  HGIKGCTSSANYSIITNGR

TYK29463.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-2450Show/hide
Query:  MPKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIW
        +P  +R IS     YKIIA+V+  R+K   P T+AE Q+AF+   QI++  L+ANE I+ W  +K +G +IKLD+EKAFDK++W F+D +L  KG+ I W
Subjt:  MPKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIW

Query:  RHGIKGCTSSANYSIITNGRLR
        R  IK C SS  YSII NGR R
Subjt:  RHGIKGCTSSANYSIITNGRLR

XP_008446987.1 PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo]1.5e-2450.42Show/hide
Query:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR
        PK FR IS     YKIIA+ L NR+K   P TI+  QLAF+   QI +  LMANE ++ W  +K +G ++KLD+EKAFD ++W+F+D +LE K F  +WR
Subjt:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR

Query:  HGIKGCTSSANYSIITNGR
          IKGC S+  YS+I NGR
Subjt:  HGIKGCTSSANYSIITNGR

TrEMBL top hitse value%identityAlignment
A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein5.1e-2652.1Show/hide
Query:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR
        PK FR IS     YKIIA+ L NR+K   P TI+E QLAF+   QI +  LMANE ++ W  +K +G ++KLD+EKAFD ++W+F+D +LE K F I+WR
Subjt:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR

Query:  HGIKGCTSSANYSIITNGR
          I+GC S+  YSII NGR
Subjt:  HGIKGCTSSANYSIITNGR

A0A5D3C104 LINE-1 retrotransposable element ORF2 protein7.3e-2550.42Show/hide
Query:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR
        PK FR IS     YKIIA+ L NR+K   P TI+  QLAF+   QI +  LMANE ++ W  +K +G ++KLD+EKAFD ++W+F+D +LE K F  +WR
Subjt:  PKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR

Query:  HGIKGCTSSANYSIITNGR
          IKGC S+  YS+I NGR
Subjt:  HGIKGCTSSANYSIITNGR

A0A803P8A0 Uncharacterized protein3.3e-2551.67Show/hide
Query:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRH
        K FR IS I   YKIIA+ L  R++ V   TI+E Q AF+   QIL+  L+ANE +ED+ S+ K+G ++K+D EKA+D+VDW FLD +L  KGFG  WR 
Subjt:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRH

Query:  GIKGCTSSANYSIITNGRLR
         I+GC SS ++SI  NGR+R
Subjt:  GIKGCTSSANYSIITNGRLR

A0A803QEA6 Uncharacterized protein3.3e-2551.67Show/hide
Query:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRH
        K FR IS I   YKIIA+ L  R++ V   TI+E Q AF+   QIL+  LMANE +ED+ S+ ++G ++K+D EKA+D+VDW FLD +L  KGFG  WR 
Subjt:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRH

Query:  GIKGCTSSANYSIITNGRLR
         I+GC SS ++SI  NGR+R
Subjt:  GIKGCTSSANYSIITNGRLR

A0A803QI00 Uncharacterized protein6.6e-2650.83Show/hide
Query:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRH
        K FR IS I   YKI+A+ L  R++ V   TI+E Q AF+   QIL+  L+ANE +ED+ S+ K+G + K+DLEKA+D+VDW+FLD +L+ KGFG +WR 
Subjt:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRH

Query:  GIKGCTSSANYSIITNGRLR
         I+GC SS ++S++ NGR+R
Subjt:  GIKGCTSSANYSIITNGRLR

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein9.0e-0433.05Show/hide
Query:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQ-ILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR
        + FR IS +    KI+ ++L NRI+    A I   Q+ FI   Q   N+    N I      + K  ++I LD EKAFDK+   F+  +LE  G    + 
Subjt:  KRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQ-ILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWR

Query:  HGIKGCTSSANYSIITNG
        + IK   S    +I  NG
Subjt:  HGIKGCTSSANYSIITNG

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases3.2e-0428.26Show/hide
Query:  LFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQK--KEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRHGIKGCTSSA
        +  R+K +    I   Q +FI      +  +   E +     +K  K  +++KLDLEKA+D++ W++L+  L + GF  +W   I   T  A
Subjt:  LFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQK--KEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRHGIKGCTSSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAACGGTTCAGATCCATCAGCTTCATCCTTTGTGCTTACAAAATCATTGCCCAGGTGCTCTTTAATAGGATTAAAATAGTGTTTCCAGCCACCATTGCAGAAAT
CCAGCTTGCCTTCATAGCTGAAGGGCAGATCTTGAATGTTTCATTGATGGCAAATGAGATTATAGAAGATTGGTTCTCTCAAAAGAAAGAAGGCATCATGATCAAGCTTG
ACTTAGAGAAGGCGTTTGATAAGGTTGATTGGAACTTCCTCGACTCCATCCTTGAAGCTAAAGGCTTTGGGATTATTTGGAGGCATGGGATCAAGGGTTGTACTTCTTCG
GCAAACTACTCCATCATTACTAATGGCCGACTAAGAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAACGGTTCAGATCCATCAGCTTCATCCTTTGTGCTTACAAAATCATTGCCCAGGTGCTCTTTAATAGGATTAAAATAGTGTTTCCAGCCACCATTGCAGAAAT
CCAGCTTGCCTTCATAGCTGAAGGGCAGATCTTGAATGTTTCATTGATGGCAAATGAGATTATAGAAGATTGGTTCTCTCAAAAGAAAGAAGGCATCATGATCAAGCTTG
ACTTAGAGAAGGCGTTTGATAAGGTTGATTGGAACTTCCTCGACTCCATCCTTGAAGCTAAAGGCTTTGGGATTATTTGGAGGCATGGGATCAAGGGTTGTACTTCTTCG
GCAAACTACTCCATCATTACTAATGGCCGACTAAGAGACTAG
Protein sequenceShow/hide protein sequence
MPKRFRSISFILCAYKIIAQVLFNRIKIVFPATIAEIQLAFIAEGQILNVSLMANEIIEDWFSQKKEGIMIKLDLEKAFDKVDWNFLDSILEAKGFGIIWRHGIKGCTSS
ANYSIITNGRLRD